Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0250.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    32   0.55 
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    31   0.96 
Z49067-2|CAA88850.1|  283|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z82081-7|CAB04960.1|  285|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z82081-6|CAB04959.1|  279|Caenorhabditis elegans Hypothetical pr...    29   5.1  
M94671-1|AAB87718.1|  279|Caenorhabditis elegans beta-galactosid...    29   5.1  
AB038505-1|BAB11970.1|  283|Caenorhabditis elegans galectin LEC-...    29   5.1  
AB000802-1|BAA22942.1|  279|Caenorhabditis elegans 32-kDa galect...    29   5.1  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical pr...    28   8.9  
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein...    28   8.9  
AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : short...    28   8.9  

>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 286 LDRKRKLRHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPP--EDTTQ 438
           +D    +R+Q Q    W D  +S+++     H+D L G  +  +PP   D TQ
Sbjct: 438 MDTSSAVRNQQQFASMWEDF-ESVKDSLQNNHNDTLEGSFNSSMPPPGRDATQ 489


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 195 QEGEEPRDVVLHFDVRFHRDTS-YRCPGRTAFGSEAEIT 308
           ++G + R   LHF     RDT  Y C GRTA G   E T
Sbjct: 99  EKGSKHRKTSLHFSSVHTRDTGLYTCTGRTAGGENFEKT 137


>Z49067-2|CAA88850.1|  283|Caenorhabditis elegans Hypothetical
           protein C44F1.3 protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 84  MPV-FTANIPGLLKVGDKIEIGGKIKENARKMSVNLCAQEGE--EPRDVVLHFDVRF 245
           +PV +T+ +   L  G  + + GKI E A+   +NL    GE      V+LH  + F
Sbjct: 10  LPVPYTSRLGQPLDAGQTLNVHGKINEGAQVAEINLLQGGGEIGPNTQVILHLKLNF 66


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -2

Query: 541 GCSGLHHRSPFVREIKITMRDPLHVRPGHNVFGHVEWYLREEVRMKLPLAVYRDDVRVLD 362
           GC+      PF R IK+  ++ + +R        VE+Y   E      ++   D V  L 
Sbjct: 235 GCNDAKFNGPFERTIKMMSKNNVAIRSKDRRLSDVEYYGDNEDLPSTHISFRLDSVMQLI 294

Query: 361 FEDYPK 344
             D+PK
Sbjct: 295 NFDFPK 300


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -2

Query: 541 GCSGLHHRSPFVREIKITMRDPLHVRPGHNVFGHVEWYLREEVRMKLPLAVYRDDVRVLD 362
           GC+      PF R IK+  ++ + +R        VE+Y   E      ++   D V  L 
Sbjct: 235 GCNDAKFNGPFERTIKMMSKNNVAIRSKDRRLSDVEYYGDNEDLPSTHISFRLDSVMQLI 294

Query: 361 FEDYPK 344
             D+PK
Sbjct: 295 NFDFPK 300


>U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical
           protein B0228.7 protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 370 HGRHHDILPGEVSF 411
           HGR HDI+PG V+F
Sbjct: 53  HGRKHDIMPGNVNF 66


>Z82081-7|CAB04960.1|  285|Caenorhabditis elegans Hypothetical
           protein W09H1.6b protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 117 LKVGDKIEIGGKIKENARKMSVNLCAQEGEEPRDVVLHFDVRF 245
           L VG  + + G +++ A++  VNL  + G    D+  HF+ RF
Sbjct: 166 LPVGKSLLVFGTVEKKAKRFHVNLLRKNG----DISFHFNPRF 204


>Z82081-6|CAB04959.1|  279|Caenorhabditis elegans Hypothetical
           protein W09H1.6a protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 117 LKVGDKIEIGGKIKENARKMSVNLCAQEGEEPRDVVLHFDVRF 245
           L VG  + + G +++ A++  VNL  + G    D+  HF+ RF
Sbjct: 160 LPVGKSLLVFGTVEKKAKRFHVNLLRKNG----DISFHFNPRF 198


>M94671-1|AAB87718.1|  279|Caenorhabditis elegans beta-galactoside
           binding protein protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 117 LKVGDKIEIGGKIKENARKMSVNLCAQEGEEPRDVVLHFDVRF 245
           L VG  + + G +++ A++  VNL  + G    D+  HF+ RF
Sbjct: 160 LPVGKSLLVFGTVEKKAKRFHVNLLRKNG----DISFHFNPRF 198


>AB038505-1|BAB11970.1|  283|Caenorhabditis elegans galectin LEC-4
           protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 84  MPV-FTANIPGLLKVGDKIEIGGKIKENARKMSVNLCAQEGE--EPRDVVLHFDVRF 245
           +PV +T+ +   L  G  + + GKI E A+   +NL    GE      V+LH  + F
Sbjct: 10  LPVPYTSRLGQPLDAGLTLNVHGKINEGAQVAEINLLQGGGEIGPNTQVILHLKLNF 66


>AB000802-1|BAA22942.1|  279|Caenorhabditis elegans 32-kDa galectin
           protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 117 LKVGDKIEIGGKIKENARKMSVNLCAQEGEEPRDVVLHFDVRF 245
           L VG  + + G +++ A++  VNL  + G    D+  HF+ RF
Sbjct: 160 LPVGKSLLVFGTVEKKAKRFHVNLLRKNG----DISFHFNPRF 198


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 128 RQNRDRWQNQGECKKDVREPLRSRRRGAEGCGSPLRR 238
           +  R RW+N    +   R PLR   R      SP RR
Sbjct: 551 KSRRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRR 587


>Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical
           protein C03C11.2 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +2

Query: 248 PGHIISLSRKNGI----WIGSGNYDTNYNMFVPGTIFR 349
           PGH+     +NGI    WIG  N D NY   VP  + R
Sbjct: 94  PGHVFVRLSENGIETPIWIGDVNCDENYQS-VPEYVVR 130


>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
           protein F54F2.1 protein.
          Length = 1226

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +3

Query: 114 LLKVGDK-IEIGGKIKENARKMSVNLCAQ---EGEEPRDVVLHFDVRFHRD 254
           L+ V DK  ++ GK+ + A K  +N C +   +G+ P D  L FD+RF+ D
Sbjct: 489 LISVEDKNCDVDGKLGKQACK-HINTCFKYEGKGDTPND--LEFDLRFNLD 536


>AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein
           protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +2

Query: 248 PGHIISLSRKNGI----WIGSGNYDTNYNMFVPGTIFR 349
           PGH+     +NGI    WIG  N D NY   VP  + R
Sbjct: 94  PGHVFVRLSENGIETPIWIGDVNCDENYQS-VPEYVVR 130


>AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 9 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +3

Query: 540 PAPSAPQSPRTATGGR*REKDCPKGQGRLANKVPPKKNWLXSKRKAPLPRXL*NWRGLKN 719
           P P  P   R   G    EK     +G++ N  PP       K     PR L   +G   
Sbjct: 175 PGPPGPPGVRGEPGSP-GEKGPTGDRGKVLNGAPPGPTGPPGKVG---PRGLSGGKGHDG 230

Query: 720 RPGKGPEPG 746
           +PG G +PG
Sbjct: 231 KPGLGGQPG 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,593
Number of Sequences: 27780
Number of extensions: 446603
Number of successful extensions: 1365
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)