Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0250.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 292 RKRKLRHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTTQHGQIH 453
           ++++L  QLQ   S + +   L  QGH     + PGE    +   DT+   + H
Sbjct: 182 QQQRLIQQLQITQSQYLLQQGLGLQGHNPSSGLQPGE-GLPMWKSDTSDGPESH 234


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 23/90 (25%), Positives = 35/90 (38%)
 Frame = -2

Query: 466 RPGHNVFGHVEWYLREEVRMKLPLAVYRDDVRVLDFEDYPKYRARNKHVVVGVVISASDP 287
           RP    +GH    + +   +     V RD V   D     +Y  +N  V+    +S   P
Sbjct: 427 RPRAKDYGHSSGSVIDRNGVMFFNMVTRDSVWCWDTRK--EYIPQNLGVIGTSNLSLVFP 484

Query: 286 NAVLPGQRYDVSRWNLTSKWRTTSLGSSPS 197
           N +     YD + W L++K      GS  S
Sbjct: 485 NDIKVDHEYDQNVWVLSNKLAMYLYGSIDS 514


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 628 RTRFRPKKTGFXRNGKLLYRGXFKIGGV*KTDRVRARNP 744
           R+R R +K+    N    YR  +K     +T+R R+R P
Sbjct: 41  RSREREQKSYKNENSYRKYRETWKERSRDRTERERSREP 79


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 628 RTRFRPKKTGFXRNGKLLYRGXFKIGGV*KTDRVRARNP 744
           R+R R +K+    N    YR  +K     +T+R R+R P
Sbjct: 41  RSREREQKSYKNENSYRKYRETWKERSRDRTERERSREP 79


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 628 RTRFRPKKTGFXRNGKLLYRGXFKIGGV*KTDRVRARNP 744
           R+R R +K+    N    YR  +K     +T+R R+R P
Sbjct: 41  RSREREQKSYKNENSYRKYRETWKERSRDRTERERSREP 79


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 628 RTRFRPKKTGFXRNGKLLYRGXFKIGGV*KTDRVRARNP 744
           R+R R +K+    N    YR  +K     +T+R R+R P
Sbjct: 41  RSREREQKSYKNENSYRKYRETWKERSRDRTERERSREP 79


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 768  GGSPLKKNRVPGPYPVGFLNPSNFKAPSV 682
            GG+ L K R      +G++ P N K P V
Sbjct: 1628 GGATLDKRRPDLRDELGYIAPPNRKLPPV 1656


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 346  KYRARNKHVVVGVVISASDPNAVLPGQ 266
            K ++  +HV+ G  + AS    V PGQ
Sbjct: 1006 KQQSPQQHVLPGKTLLASQIKLVSPGQ 1032


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,767
Number of Sequences: 438
Number of extensions: 6224
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)