Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0248.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015...    38   0.007
05_03_0039 - 7621613-7622695                                           29   4.3  
12_02_1174 - 26696869-26698191                                         29   5.7  
07_03_0091 + 13312904-13313647                                         28   9.9  

>11_06_0457 -
           23800451-23800576,23801259-23801312,23801390-23801539,
           23801919-23802012,23802460-23802567,23802661-23802793,
           23802903-23803139,23803488-23803586,23804968-23804983
          Length = 338

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = +3

Query: 369 ADCXCFDVDSTVLQDXGIXXLGKXCGEXRPGXKXWXAEA 485
           AD  CFDVDSTV  D GI  L   CG  +     W A+A
Sbjct: 126 ADAVCFDVDSTVCLDEGIDELADFCGAGK-AVAEWTAKA 163


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
 Frame = -1

Query: 710 DPPGXPXPEXQXSPGLTPL-LSGXKLFP-----XKPGXYRGIXPKREIFPKEXPXNGPDV 549
           +P   P P+    PG  P      KL P      KP       PK +  PK  P   P+ 
Sbjct: 269 EPKPVPKPKPIPHPGPKPKPKPDPKLEPKPHPEPKPHPMPEPEPKPKPEPKPEPKPYPEP 328

Query: 548 KPXMMPXXFXKPSRXVIWPPXXFRRPVLXP 459
           KP + P    KP    I PP   + P + P
Sbjct: 329 KPKLKPE--PKPGPKPIAPPNKHKPPHMPP 356


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 24/88 (27%), Positives = 33/88 (37%)
 Frame = -1

Query: 707 PPGXPXPEXQXSPGLTPLLSGXKLFPXKPGXYRGIXPKREIFPKEXPXNGPDVKPXMMPX 528
           PP  P      +PG TP +   K  P  P     +   R + PK  P     + P   P 
Sbjct: 221 PPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPPPSPLPPP--PE 278

Query: 527 XFXKPSRXVIWPPXXFRRPVLXPXSPFP 444
            +  P+   + PP    +P   P SP P
Sbjct: 279 DYWSPT--AVTPPEP-TKPKPPPPSPPP 303


>07_03_0091 + 13312904-13313647
          Length = 247

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/67 (28%), Positives = 24/67 (35%)
 Frame = -1

Query: 710 DPPGXPXPEXQXSPGLTPLLSGXKLFPXKPGXYRGIXPKREIFPKEXPXNGPDVKPXMMP 531
           DP   P PE + SP   P  +       KP       P  +  PK+ P   P   P   P
Sbjct: 47  DPTPKPQPETKPSPQPNPQPNPQP--DPKPSPQPDPKPTPQPEPKQDPQPNPQPDPKQSP 104

Query: 530 XXFXKPS 510
               KP+
Sbjct: 105 QPDPKPT 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,988
Number of Sequences: 37544
Number of extensions: 222086
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)