BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesV0244.Seq (797 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 5.4 SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 25 9.5 >SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 26.2 bits (55), Expect = 5.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 152 VKSATLPRTGRRYSKYSSYPTTYNMNLRA 66 VKS+T P +G ++ SSYP T +L + Sbjct: 235 VKSSTSPFSGSKFLSSSSYPHTPEAHLNS 263 >SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 239 Score = 25.4 bits (53), Expect = 9.5 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 152 VKSATLPRTGRRYSKYSSYPTTYN 81 V + TL GR+ SK+SS P YN Sbjct: 102 VNAETLLDYGRKLSKFSSAPPGYN 125 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,375,223 Number of Sequences: 5004 Number of extensions: 36359 Number of successful extensions: 69 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 69 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 389395636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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