Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0244.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...    85   7e-17
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    29   5.1  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      29   5.1  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 39/68 (57%), Positives = 49/68 (72%)
 Frame = +3

Query: 255 DPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFGV 434
           DPQW++EQI+S     + L IGR+E+  M+K T L+F  LEK WAL + ALIDMKIEFGV
Sbjct: 141 DPQWTDEQIVSNGLMIDHLKIGREEISLMKKMTKLVFRALEKGWALSNSALIDMKIEFGV 200

Query: 435 DTEGSIVL 458
             EG I+L
Sbjct: 201 TVEGEILL 208


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 255 DPQWSEEQIISAKFNYNGL-LIGRDEVDY----MRKATILIFEILEKAWALRDCALIDMK 419
           +P W+    +    +  G+ ++GR +       +R  T  I+ ++EK   + DC +    
Sbjct: 547 EPFWAHGDFVRVNHSTGGVEMLGRSDATLNRGGVRIGTAEIYSVVEKIPHIADCIVAGRL 606

Query: 420 IEFGVDTE 443
           +E G+D E
Sbjct: 607 VEEGMDEE 614


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 255 DPQWSEEQIISAKFNYNGL-LIGRDEVDY----MRKATILIFEILEKAWALRDCALIDMK 419
           +P W+    +    +  G+ ++GR +       +R  T  I+ ++EK   + DC +    
Sbjct: 547 EPFWAHGDFVRVNHSTGGVEMLGRSDATLNRGGVRIGTAEIYSVVEKIPHIADCIVAGRL 606

Query: 420 IEFGVDTE 443
           +E G+D E
Sbjct: 607 VEEGMDEE 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,394
Number of Sequences: 27780
Number of extensions: 207638
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)