Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0242.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   136   5e-33
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  136 bits (328), Expect = 5e-33
 Identities = 59/76 (77%), Positives = 72/76 (94%)
 Frame = +1

Query: 253 FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAI 432
           +FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAI
Sbjct: 70  YFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAI 128

Query: 433 ILAKLSVLPVRRGYWG 480
           I+ KLS++P+RRGYWG
Sbjct: 129 IMGKLSIMPIRRGYWG 144



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 28/42 (66%), Positives = 38/42 (90%)
 Frame = +2

Query: 128 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVD 69


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 131 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDSSSARP 271
           +D+ EW P++    LV   ++   E  +++    K++E+ID     P
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELIDDQEETP 287


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 125 RAHDHGRDHYRVHEDRHGLXLHRVIRXRRENRHVHRLEQRP 3
           ++HDHG  H + H DR      +  R  R++R     ++ P
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGP 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,037
Number of Sequences: 5004
Number of extensions: 50966
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)