Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0242.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   130   1e-30
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    30   1.7  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  130 bits (313), Expect = 1e-30
 Identities = 60/71 (84%), Positives = 66/71 (92%)
 Frame = +1

Query: 268 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 447
           +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156

Query: 448 SVLPVRRGYWG 480
           +V+PVRRGYWG
Sbjct: 157 AVVPVRRGYWG 167



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/42 (73%), Positives = 34/42 (80%)
 Frame = +2

Query: 131 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDS 256
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID+
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA 93


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 351 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEESMISNSLIGKEN 217
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 351 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEESMISNSLIGKEN 217
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,077,070
Number of Sequences: 27780
Number of extensions: 303588
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)