Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0242.Seq
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 145 3e-35
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 145 3e-35
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 145 3e-35
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 145 3e-35
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 144 5e-35
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 144 6e-35
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.2
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 6.2
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 145 bits (351), Expect = 3e-35
Identities = 68/82 (82%), Positives = 75/82 (91%)
Frame = +1
Query: 235 RIRDH*FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWG 480
AIRGAIILAKLSV+PVRRGYWG
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWG 164
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +2
Query: 134 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 145 bits (351), Expect = 3e-35
Identities = 68/82 (82%), Positives = 75/82 (91%)
Frame = +1
Query: 235 RIRDH*FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWG 480
AIRGAIILAKLSV+PVRRGYWG
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWG 164
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +2
Query: 134 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 145 bits (351), Expect = 3e-35
Identities = 68/82 (82%), Positives = 75/82 (91%)
Frame = +1
Query: 235 RIRDH*FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWG 480
AIRGAIILAKLSV+PVRRGYWG
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWG 164
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +2
Query: 134 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 145 bits (351), Expect = 3e-35
Identities = 68/82 (82%), Positives = 75/82 (91%)
Frame = +1
Query: 235 RIRDH*FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 414
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 415 AIRGAIILAKLSVLPVRRGYWG 480
AIRGAIILAKLSV+PVRRGYWG
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWG 164
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +2
Query: 134 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 144 bits (350), Expect = 5e-35
Identities = 64/74 (86%), Positives = 72/74 (97%)
Frame = +1
Query: 259 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 438
+GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 83 VGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIIL 142
Query: 439 AKLSVLPVRRGYWG 480
AKLSV+P+RRGYWG
Sbjct: 143 AKLSVVPIRRGYWG 156
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/40 (70%), Positives = 37/40 (92%)
Frame = +2
Query: 134 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIID 80
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 144 bits (349), Expect = 6e-35
Identities = 65/74 (87%), Positives = 71/74 (95%)
Frame = +1
Query: 259 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 438
+GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 92 IGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 151
Query: 439 AKLSVLPVRRGYWG 480
AKLSV+PVRRGYWG
Sbjct: 152 AKLSVVPVRRGYWG 165
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +2
Query: 134 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIID 89
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 277 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 456
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 457 PV 462
V
Sbjct: 209 QV 210
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 343 AFVAIGDNNGHIGLGVKCSKE 405
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 428 APRMAVATSLLHXTPKPI*PLLSPMATNALKRVRCPARVCFCTGMILRTSSFR 270
A A+ H +P + P L P N R+R A CF +G + R + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,889
Number of Sequences: 28952
Number of extensions: 286339
Number of successful extensions: 674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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