Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0240.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576... 32 0.38
02_03_0106 + 15292869-15296138 31 0.88
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 31 1.2
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 30 1.5
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 30 2.0
02_04_0170 + 20576149-20576889 29 4.7
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 28 6.2
01_06_0576 - 30365903-30366328,30367262-30367640,30368215-303684... 28 8.2
>10_08_0512 +
18455454-18456121,18456214-18456318,18457493-18457615,
18457732-18457902,18458076-18458205,18458458-18458670,
18458757-18458866,18459144-18459186
Length = 520
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -2
Query: 232 LWIVCDVILWATLAIQVDMSCVWLTLRQRPVSRQTLRCFLSRTLFKPQASISVDKYKKHT 53
LWIV + +W + + C+W R++P +++ + I+VD+ ++H
Sbjct: 22 LWIVIGISIWVVIFFILGFMCLWSIYRRKP--KKSFDKIPVSQIPDVSKEIAVDEVREHA 79
Query: 52 VV 47
VV
Sbjct: 80 VV 81
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 144 GRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKE-ATENLDEIRD 299
GR +++++++T + + HR+ ++ W C++ L E ++E L ++D
Sbjct: 308 GRILITTRSEEVATGMKAMVHRVDKMDAENGWALLCRQSLPECSSEELASLKD 360
>07_03_1696 - 28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Frame = +3
Query: 261 LKEATENLDEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVIT----------- 407
LKE T + R RKE A S ++G+T+ + + S+ E+I
Sbjct: 846 LKEQTSEVHGARKRKETSPADSGLNSQYGVTESKYELVANKDSADELIRKIDISSNKSTT 905
Query: 408 -LTQVGLETKQDTVTPIPVQVASTTD-LVAEKIEAVKRMTMISITEEMPEPRDV 563
L G+ ++ T+ + + + D L + + + + R+ + T + P+ D+
Sbjct: 906 GLGSTGMSSRVQTIAGLKYTIQTGIDSLQSSRQQVMDRLLELDKTMDSPKDEDI 959
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Frame = +3
Query: 333 KHKHGITKKLS-SITKKRSSSPEVITLTQVG------LETKQDTVTPIPVQVASTTDLVA 491
K K + + L+ + K + +PEV+ + + G LE QD++TP PV+ ST + VA
Sbjct: 269 KKKPKVVQPLTCEVCKIQCDTPEVLRIHKTGKKHKKNLERLQDSITPKPVKPPSTPNTVA 328
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +3
Query: 213 TSQTIQSTWRTACQEDLKEATENLDEI-RDRKENERAVSTEKHKHGITKKLSSITKKRSS 389
TS + ++ +++ + LK + NLD R EN + KH + ++ S SS
Sbjct: 151 TSGSTENNEQSSAEHMLKLSGVNLDSFFAARMENTTTAAVPTQKHTVVQEKQSTDSHGSS 210
Query: 390 SPEVITLTQVGLETKQDTVTPIPVQVA 470
S E+ G +T I V A
Sbjct: 211 SLEMRATYLTGTKTSSQNTNQIEVTPA 237
>02_04_0170 + 20576149-20576889
Length = 246
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 142 VSRQTLRCFLSRTLFKPQASISVDKYKKHTVVSMCKFVFFFY 17
+ T+R L RT AS ++ +Y V S+ F+F FY
Sbjct: 162 IGNMTVRAPLRRTGVLAMASAALKRYNITAVTSLSMFMFMFY 203
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 198 VAHRITSQTIQSTWRTACQEDLKEATENLDE 290
+AH + T+QS W+ C E K E L +
Sbjct: 320 LAHYLAMATVQSVWQENCMEQFKLVLEALHQ 350
>01_06_0576 -
30365903-30366328,30367262-30367640,30368215-30368459,
30368819-30369039,30369786-30370074
Length = 519
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 581 PFGNHQDVPRFRHFFGNANHRHSLYSFDFFG 489
P G+H VPR FF N H SF + G
Sbjct: 75 PLGSHDVVPRVMPFFCNVLKEHGKLSFVWTG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,263,663
Number of Sequences: 37544
Number of extensions: 424349
Number of successful extensions: 1312
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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