Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0240.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40430.1 68418.m04903 myb family transcription factor (MYB22)... 38 0.008
At3g01085.1 68416.m00012 protein kinase family protein contains ... 32 0.32
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 31 0.97
At4g15030.1 68417.m02309 expressed protein 30 1.7
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ... 29 3.9
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ... 29 3.9
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 28 5.2
At1g45207.2 68414.m05186 remorin family protein Since this genom... 28 5.2
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 6.8
At2g38440.1 68415.m04721 expressed protein 27 9.0
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo... 27 9.0
At2g02440.1 68415.m00183 hypothetical protein 27 9.0
At1g55930.1 68414.m06415 CBS domain-containing protein / transpo... 27 9.0
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 27 9.0
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam... 27 9.0
>At5g40430.1 68418.m04903 myb family transcription factor (MYB22)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 256
Score = 37.5 bits (83), Expect = 0.008
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = +3
Query: 285 DEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQ-VGLETKQDTVTPIPV 461
D+++ EN++ ST K+ K S ITKKR + E I L + V LE K+ T
Sbjct: 29 DKMKKTYENKKEASTSKYL-----KKSDITKKRWTESEDIKLKEMVALEPKKWTKVAKHF 83
Query: 462 QVASTTDLVAEKIEAVKRMTMISITEEMPEPRDVLMIPKXVLRKWV*TTERKPGRGF 632
+ T E+ R + T E + ++ + K + KW+ +E+ PGR +
Sbjct: 84 E-GRTPKQCRERWHNHARPNVKKTTWSEEEDQILIEVHKVIGAKWIQISEQLPGRSY 139
>At3g01085.1 68416.m00012 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; contains
non-consensus splice site (GC) at intron 2
Length = 629
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 294 RDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTVTPIPVQVAS 473
R+ + R VS +K + TKKL + P + ETK++ T I VQ S
Sbjct: 426 REELQRRRRVSIKKRDNLATKKLGKSRRATVKEPTNLNRLPTHQETKKEAETEIVVQTPS 485
Query: 474 TTDLVAEKIE 503
T + E
Sbjct: 486 ETSQATTRSE 495
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +3
Query: 39 HIDTTVCFLYLSTLMDA*GLNNVRERKHRRVWRLTGRCRRVSQTQDIST*IARVAHRITS 218
H+ + Y+S+ D G NV RKHRR R+ Q D AHR+ S
Sbjct: 1044 HLSVSDLLDYISSDPDTKG--NVAHRKHRRA--------RILQVNDKVASADDDAHRVAS 1093
Query: 219 QTIQSTWRTACQEDLKEATENLDE 290
Q TW + D+ ++ +++
Sbjct: 1094 QIDIVTWNNVAEADVTKSRSEVND 1117
>At4g15030.1 68417.m02309 expressed protein
Length = 179
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 246 ACQEDLKEATENLDEIRDRKENERAVSTEKHK 341
AC+ + ++ DE RKE ER+ S EK K
Sbjct: 94 ACERSKSHSEDDTDEEEKRKEGERSESNEKKK 125
>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 267 EATENLDEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTV 446
E ++L + DR + A + EK G+ L+ TK++ S VI + L+ ++ +
Sbjct: 155 EDIKDLKPLNDRVFIKVAEAEEKTAGGLL--LTETTKEKPSIGTVIAVGPGSLD-EEGKI 211
Query: 447 TPIPVQVAST 476
TP+PV ST
Sbjct: 212 TPLPVSTGST 221
>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 267 EATENLDEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTV 446
E ++L + DR + A + EK G+ L+ TK++ S VI + L+ ++ +
Sbjct: 155 EDIKDLKPLNDRVFIKVAEAEEKTAGGLL--LTETTKEKPSIGTVIAVGPGSLD-EEGKI 211
Query: 447 TPIPVQVAST 476
TP+PV ST
Sbjct: 212 TPLPVSTGST 221
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 261 LKEATENLDEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQD 440
L+EA E++DE +KE E TE G+T++ + +V+T + E KQ+
Sbjct: 622 LEEAIEDMDEELKKKEQEEEKKTEM---GLTEEDEDVLVPVYKEEKVVTAKEKIQENKQE 678
>At1g45207.2 68414.m05186 remorin family protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 555
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 282 LDEIRDRKENERAVSTE-KHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTVTPIP 458
L E ++R+ A++ + ++ ++ LS++T S+SP V+ + + + T + +V P P
Sbjct: 131 LRECQERRSRSEALAKKLDYQRTVSLDLSNVT---STSPRVVNVKRASVSTNKSSVFPSP 187
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/90 (26%), Positives = 36/90 (40%)
Frame = +2
Query: 329 RETQARHHQEVIINYKKTQFLPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSC 508
R Q R+ N ++ PR + +P R R RY+ STS D R R+ R
Sbjct: 446 RNFQDRNRDRYPSNRSYSERSPRGRFRSPPRRRSPPRYNRRRRSTSRSPDGYR-RRLRDG 504
Query: 509 KENDDD*HYRRNAGT*GRLDDSQXGLTKMG 598
+ H R+ R SQ +++G
Sbjct: 505 SRSQSPRHRSRSQSPRKRQPISQDLKSRLG 534
>At2g38440.1 68415.m04721 expressed protein
Length = 1399
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 392 PRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSC 508
P S+ S + YS +DT++ IDD+S G K C
Sbjct: 440 PVSENGRSSFGKKSTSYSYSDTASISIDDQSDGEKLSGC 478
>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985];
T20K24.13 has been merged with T20K24.12 per suggestion
of Dr. Kristian Axelsen (axe@biobase.dk)
Length = 1172
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +3
Query: 141 TGRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKEATENLDE 290
+G C + Q +DI + + H +T I+ + C+ ++ E + E
Sbjct: 867 SGHCEKKKQAEDIVVPVQIIGHALTHVEIELQTKETCKTSCCDSKEKVKE 916
>At2g02440.1 68415.m00183 hypothetical protein
Length = 138
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 203 GDSGNSGRYVLCLADSTTTTGEPPDPPVFSFSDIIQTSSIHK 78
GD G+S Y+L ST TT + PD + ++ HK
Sbjct: 96 GDGGDSENYMLTEDQSTKTTDKKPDTEALMAENQSTKTTDHK 137
>At1g55930.1 68414.m06415 CBS domain-containing protein /
transporter associated domain-containing protein
contains Pfam profiles PF00571: CBS domain, PF03471:
Transporter associated domain, PF01595: Domain of
unknown function
Length = 653
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 489 AEKIEAVKRMTMISITEEMPEPRDVL-MIPKXVLRKW 596
A K+ AV R +S +++ E RDV M+PK V RKW
Sbjct: 588 ARKVSAV-RFERVSDMDQVSEARDVKNMVPKFV-RKW 622
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 195 RVAHRITSQTIQSTWRTACQEDLKEATEN-LDEIRDRKEN-------ERAVSTEKHKHGI 350
R A+ + + S + + QE LK+ + LDE+RD E+ E+ TE +
Sbjct: 208 RRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRY 267
Query: 351 TKKLSSITKKRSSSPE 398
K+L + KKR+ +
Sbjct: 268 KKELYDLVKKRTQDED 283
>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 750
Score = 27.5 bits (58), Expect = 9.0
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Frame = +3
Query: 222 TIQSTWRTACQEDLKEATENLDEIRDRKENERAVSTEKHKH------GITKKLSSITKK- 380
TI++ + + QE+LK ENL +I +R +N K +H T +S I KK
Sbjct: 225 TIKNVLKLSNQEELKFTRENLKKIEERLKNVFIEFYRKLRHLKNYSFLNTLAISKIMKKY 284
Query: 381 -----RSSSPEVITLTQVGLETKQDTVTPIPVQVAST 476
RS++ + + T D + + ++V ST
Sbjct: 285 DKIASRSAAKPYMEMVDKSYLTSSDEINKLMLRVEST 321
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,783
Number of Sequences: 28952
Number of extensions: 333299
Number of successful extensions: 1147
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -