Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0239.Seq
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    26   0.28 
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    26   0.38 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.6  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 136 PGSPRRIAIPRQVPSRTTQ*LVRCKQFHRRSLNYNINQKSSKYKK 2
           P  P+R+ I    PS   Q + +   FH+  L  NI+ K    K+
Sbjct: 48  PEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNISDKHGFLKE 92


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 136 PGSPRRIAIPRQVPSRTTQ*LVRCKQFHRRSLNYNINQK 20
           P  P+R+ I    PS   Q + +   FH+  L  NI+ K
Sbjct: 48  PEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNISDK 86


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +2

Query: 488 MYRVLMGY*SVNHISWRMFNGNTEXPESSPGEPRNKIGTFPKRRLXGNLSLGKHW 652
           MY VL+ +  ++   W+  NG       +   P N I   P+     + + G HW
Sbjct: 73  MYTVLLEFVQIDPHRWKYVNGEWVPGGKAEVPPSNPIYIHPE-----SPNFGAHW 122


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 461 FYVQCGYRYMYRVL 502
           F V+ GYRY +RV+
Sbjct: 272 FTVEQGYRYRFRVI 285


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 284 DVITITPD*SDTKIILRRRLKNISP 210
           DVI + P+ SD++  L    K ISP
Sbjct: 289 DVIKVEPELSDSEKTLCNGSKGISP 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,075
Number of Sequences: 336
Number of extensions: 4249
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)