Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0239.Seq
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    30   0.31 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   8.9  

>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 410 YLYYFVFPKVVSKTPPLFYVQCGYRYMYRVLMGY*SVNHISWRMFNGNTEXPESSPGEPR 589
           Y+  +   + VS  P L Y +C YR    +L      N++SW   N N    +S    PR
Sbjct: 6   YISNYSRTRAVSCAPVLSYKKCSYRNFNGLLQARFQSNNLSWS--NRNRVVYKSFQPNPR 63

Query: 590 NK 595
           +K
Sbjct: 64  DK 65


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 245  IILRRRLKNISPPGMFKN 192
            I+LRRRL  ++P G FK+
Sbjct: 1622 IVLRRRLSQVAPYGKFKH 1639


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 205 ECLRILRMSIAQIHRIIS*LSSCPGSPRRIAIPRQVPSRTTQ 80
           + LRI  +S   +HR+I   S    SPR  +   Q+ +R TQ
Sbjct: 162 DVLRISNLSSKILHRLILYNSKVGDSPRFCSALFQITNRATQ 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,010
Number of Sequences: 5004
Number of extensions: 68265
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)