Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0239.Seq
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    29   4.0  
10_07_0042 - 12298536-12298589,12298704-12298810,12298850-122988...    28   7.0  

>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 20  FLIDVVVK*SSVELFTTHQSLCGTGWNLSRYRDPPRRAGT 139
           +L+  +VK  +VEL+ TH + CG  + L+    P R  GT
Sbjct: 192 YLLTRIVKLITVELYCTHTAACGF-YYLATTLPPAREGGT 230


>10_07_0042 -
           12298536-12298589,12298704-12298810,12298850-12298861,
           12299554-12300511
          Length = 376

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 738 FIKKIGSPVLNQGPGVYRNXXIIFPGPAXQCLPKL 634
           F  +IG  ++  G  +Y    +I PGP  QC+  L
Sbjct: 276 FQSRIGFGMIGLGDNIYLVGGVIGPGPRNQCIKPL 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,711,948
Number of Sequences: 37544
Number of extensions: 405460
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)