Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0237.Seq
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 30 0.28
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 30 0.28
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 29 0.49
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.6
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 3.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.5
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 26 4.6
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 26 4.6
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 4.6
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.1
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 6.1
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 6.1
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 6.1
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 6.1
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.0
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 8.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.0
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 29.9 bits (64), Expect = 0.28
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 303 RCVCE*ATEVGIAFVRGRMLEVWQHWCCLG 214
RCVC+ ++G +V+ + WQH C+G
Sbjct: 22 RCVCKSQEDIGDTWVQCDGCDCWQHASCVG 51
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.9 bits (64), Expect = 0.28
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 10 PRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPAENN 135
PR+ E T + +S I++P +Q + PF S+ A NN
Sbjct: 670 PRKNTEESTSSSSFSSLITSPASLQYDENPFKQSVVAELNNN 711
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 29.1 bits (62), Expect = 0.49
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 132 QYAGVGASTAQYHRSTRESLPTSAESD-TPNNTN--VAKLPTSAHEQMQYRP-QLPIHIH 299
Q AG G STA H R S T S +P+N N P +++ Q P + P+ +H
Sbjct: 163 QRAGAGVSTATSHTRRRSSAGTDPFSPVSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMH 222
Query: 300 N 302
+
Sbjct: 223 S 223
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 2.6
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Frame = +1
Query: 46 AQTSAISNPNIMQMNNIPFSTSLTAPAENNMPVWE-------LQQPNITGVQESPFRLQL 204
A ++A SNP Q P S + +++P W+ +Q N+ Q +PF
Sbjct: 430 ASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGT 489
Query: 205 N-PTPQTTPMLPNFQHPP 255
+ P P TT P PP
Sbjct: 490 SAPLPPTTFAPPGVPLPP 507
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -2
Query: 163 WAVEAPTPAYCSLQVQSNLLRKGYCSSA*YWDLISLRSELACVFFRHSVDEAPK 2
W V A A+ Q ++ L CS + W +SL S CV+ D A K
Sbjct: 224 WNVAAECDAW---QANNSELSSSICSISANWSTLSLLSTEGCVYAFGRCDRAQK 274
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.5
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 12 SSTECRKNTHASSDLSDIKSQYYADEQYPFLNKFDCTCREQYAGVGASTAQYHRSTRESL 191
+S+ T A++ S I S + L + T A +S+AQY+ S+ L
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTP---LTSSNSTTAATSASATSSSAQYNTSSL--L 282
Query: 192 PTSAESDTPNNTNVAKLPTSA 254
P+S S TP ++ + TSA
Sbjct: 283 PSSTPSSTPLSSANSTTATSA 303
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 249 SAHEQMQYRPQLPIHIHNDLRSFVPLTL 332
SA+ + P L H++NDL+ +PL L
Sbjct: 193 SANASTRPSPTLAKHVYNDLQGKIPLIL 220
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 130 NNMPVWELQQPNITGVQESPFRLQLNPTPQTTPMLP--NFQHPPTNKCNTDLS 282
N+ P ++ ++ QESP L+ +P P + +LP N H + + LS
Sbjct: 21 NSDPASKVDNVSVKIEQESPLALEGSPLPTVSDVLPETNNAHEEVSSSSWSLS 73
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 106 TSLTAPAENNMPVWELQQPNITGV 177
T L+A +N + +W+L+ PN G+
Sbjct: 126 TFLSASLDNTIRLWDLRSPNCQGL 149
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +2
Query: 266 AIPTSVAYSHTQRPEIFCPAHTMSSAITKLRIYTAAATVTDNTNY 400
A P++ HTQ P+ +H + ATV +N Y
Sbjct: 182 AAPSTATTQHTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEPY 226
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 6.1
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Frame = +1
Query: 7 EPRQPNAEKTHMQAQTSAISNPNIMQMNNI----PFSTSLTAPAENNMPVWELQQPNITG 174
+P P ++T MQ Q + P Q + P T + P + P TG
Sbjct: 566 QPMMP--QRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTG 623
Query: 175 VQESPFRLQLNPTPQTTPMLP 237
+Q +Q PQ T M P
Sbjct: 624 MQPQMPGMQQPMAPQRTGMQP 644
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 43 QAQTSAISNPNIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQESPFRLQLN 207
+A +S+ I+ N+ FST+ T P N+ P + ES F L+ N
Sbjct: 91 KATKDILSSVKIVWALNLRFSTAFTGPMLANLYCALYPNPGYSLCHESYFELKQN 145
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 294 CE*ATEVGIAFVRGRMLEVWQHW 226
C+ T +AF+ GR LE W +W
Sbjct: 281 CDNMTICIVAFLHGRGLEDWYNW 303
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 135 YAGVGASTAQYHRSTRESLPTSAESDTPNNTNVAKLPTSAHEQ--MQYRPQLPIHIHNDL 308
YA + +Y R T+ + + ES + PTS++E+ +P P ++D
Sbjct: 178 YAAKASIQKRYERLTKRGVDQAHESSPVKKAKLDDYPTSSNEETISSVKPPSP---NSDS 234
Query: 309 RSFVP 323
+ F+P
Sbjct: 235 KFFLP 239
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 350 W*WLNS*CERDKRSQVVVYVNRQLRSVLHLFVGGCWKFGNIGVVWGVGF 204
W W+ K V ++ R+++ + L V WK +G V+G+GF
Sbjct: 169 WLWMYRKSGVTKDEGVTGFLARKMQRLFRL-VDSPWKIYVLGFVFGLGF 216
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 196 LQLNPTPQTTPMLPNFQHPP 255
LQLNP P+ TP +H P
Sbjct: 664 LQLNPLPELTPRKVLLEHVP 683
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 272 PTSVAYSHTQRPEIFCPAHTMSSAITKLRIYTAAATVTDNTNYTSNAXNVY 424
P ++ Y++T + P+ T + + T A++ +T Y S+A NVY
Sbjct: 348 PAAINYNYTTNYSVSSPSVT--NPFFDVGSSTQNASLMGSTGYPSSANNVY 396
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 8.0
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 150 ASTAQYHRSTRESLPTSAESDTP-NNTNVAKLPTSAHEQMQYRPQLPIHIHNDLRSFVPL 326
A+T + ST+ + PT+ S TP +++V T PI + L S P+
Sbjct: 361 ANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPI 420
Query: 327 T 329
T
Sbjct: 421 T 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,536
Number of Sequences: 5004
Number of extensions: 47398
Number of successful extensions: 189
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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