Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0233.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 30 0.33
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 1.0
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 28 1.8
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 3.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 4.1
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 4.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.4
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 26 7.2
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 26 7.2
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.2
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 25 9.5
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.5
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 377 KPSSNVTELKQVPSSSKHQI-EQSVQGQYNE----SEVKYSTKHRGN*LPSSDSQWIR 535
+P S+V +++ P++SK+Q +S +G S K + KH GN LP W+R
Sbjct: 548 QPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSISHSKNTDKHVGNELPQDIPSWLR 605
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 269 IAINVTDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSV 448
+++ T + +Q LN T +S +EN SKPS+ + S++HQI+
Sbjct: 55 VSVRETQRNRKFSSLQKHLNTETPSFS-VS-IENPSKPSAAFNDASLGKKSTEHQIDGIR 112
Query: 449 QGQYN 463
G N
Sbjct: 113 NGSSN 117
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +2
Query: 116 KSTVSATFGDDLAHSTPPYLTTYQAQVPRHKEFLSTC-IGYFITTIHKISSSIAINVTDL 292
K +V DDLA +TP L + Q+ K+ +S Y I + + +++ ++
Sbjct: 70 KQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPAEI 129
Query: 293 RHRLGGIQNQLNEATRHCQDI--SYLENISKPSSNVTE 400
R ++ I ++ E + + + ++ ISK + T+
Sbjct: 130 REKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTD 167
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 127 YSAFHNNHSGNHKPKFLTWLFHVS 56
Y F N + H + L+WLFH+S
Sbjct: 558 YEGFQNYYYSCHNGRKLSWLFHLS 581
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -3
Query: 465 SLYCPCTLCSI*CFEDEGTC-LSSVTLLEGFEIFSK*LISWQCL-VASFN*FW-MPPNLC 295
SL C C + C ++GTC +S+ ++G + C+ + + W P+L
Sbjct: 435 SLSCHSDSCKVSCQNEDGTCFISAKDYIDGTRCRGGLCYNGVCVPIEGSSASWSKQPSLF 494
Query: 294 LKSVTLIAILELILW 250
S T++ L +I W
Sbjct: 495 CASGTMLISLAVIAW 509
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 236 STQCTSKEIPYDAVPVLGTW*DTAAWSAQGHHQTS 132
ST C +P AV ++G + D WS+ H+ S
Sbjct: 201 STLCDMLPVPQFAVRLMGLYFDNVGWSSHIIHRPS 235
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 340 SGRFIQLILDATQSMSQVGDVDRDTGAYLMDG 245
SG + L+LD T ++ G + DTG ++DG
Sbjct: 526 SGEQLGLLLDRTNFYAEQGGQEYDTGHIVIDG 557
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 235 VPNARRKKFLMTRYLCLVRGEIRRRGVRKVITKRR*YSAFHNNHSG---NHKPKF 80
+P +++KF+ T +L + + + + +TKR+ Y +N + H PKF
Sbjct: 657 IPERKKEKFIRTVFLNALEVQAVNSKLAEALTKRQNYKPIVDNIADIFLEHVPKF 711
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 766 PGSLPRWEI*VPNNGFSGGPNFPVFKDPXKTGXPSGPLRXTF 641
P + P+ E+ V NN +G DP PS LR TF
Sbjct: 389 PVNFPKEELEVENNAQNGYTVSTEITDPYLARLPSPSLRGTF 430
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 400 LSHVTRRL*DIL*VANILAMSGRFIQLIL-DAT-QSMSQVGDVDRDTGAYLMDGC-DEVP 230
L H+ + + + L A + + F+Q L D Q M Q ++ D ++DGC D VP
Sbjct: 37 LGHMLKYIPEKLSYARVSGLGHTFVQRELWDVKMQLMEQDDSIESDDKLKVLDGCNDLVP 96
Query: 229 N 227
N
Sbjct: 97 N 97
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 505 LIPPMFCRVLYFAFVILSLYTLFYLMF 425
LI P+F Y+AF ++ L +LFY +
Sbjct: 58 LIVPLFLYPEYWAFKLVELLSLFYCAY 84
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 3 KN*NNKHNLYIFGVFYVQETWKSH 74
+N N K I+G F +Q+ W H
Sbjct: 20 RNANKKAKAKIYGNFVIQQNWDKH 43
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 361 VANILA-MSGRFIQLILDATQSMSQVGDVDR 272
+ N+LA + IQ+ LD +++ +VG++DR
Sbjct: 424 LCNLLACQDNKIIQVALDGIENILRVGELDR 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,660,230
Number of Sequences: 5004
Number of extensions: 82863
Number of successful extensions: 212
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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