Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0233.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)          29   3.3  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  29   3.3  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)                  28   7.6  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   7.6  

>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
          Length = 396

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 251 HKISSSIAINVTDLRHRLGGIQNQLNEATRHCQDI-SYLENISKPSSNVTELKQVPSSSK 427
           HK ++S+ +N+T+LR +L     ++++  +  +D+ + ++       N     Q P   K
Sbjct: 243 HKQNTSLELNITELRLKLKATDKEMHQERQKVRDVEAVVKRFKTDLYNCVGFIQEPKKLK 302

Query: 428 HQIEQSVQGQYNESEVKYS 484
             ++   Q +Y + E   S
Sbjct: 303 ENVKALYQ-KYVQDETPES 320


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 251 HKISSSIAINVTDLRHRLGGIQNQLNEATRHCQDI-SYLENISKPSSNVTELKQVPSSSK 427
           HK ++S+ +N+T+LR +L     ++++  +  +D+ + ++       N     Q P   K
Sbjct: 689 HKQNTSLELNITELRLKLKATDKEMHQERQKVRDVEAVVKRFKTDLYNCVGFIQEPKKLK 748

Query: 428 HQIEQSVQGQYNESEVKYS 484
             ++   Q +Y + E   S
Sbjct: 749 ENVKALYQ-KYVQDETPES 766


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 347  QDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEVKYSTKHRG 499
            + +S    +S+PS  ++   +   SS   +E+++  + N+ + K S +H G
Sbjct: 1598 KSVSKHGKLSEPSDGMSSSSRSTCSSSADLEKAISNKENDKQYKSSGRHEG 1648


>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
          Length = 453

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 337 GRFIQLILDATQSMSQVGDV-DRDTGAYLMDGCDEVPNARRKK 212
           GR+  LI  A+  +++V  + +R    Y++D  +  PNARR+K
Sbjct: 203 GRWDALIKQASDILNKVLKIAERKNRNYILDQTNVYPNARRRK 245


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 264  ELILWMVVMKYPMHVERNSL*RGTCAWY 181
            E  +W  V    +HVE  +L  G C WY
Sbjct: 1921 ECCVWKCVFVLVLHVEVRALADGACGWY 1948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,876,187
Number of Sequences: 59808
Number of extensions: 656152
Number of successful extensions: 2071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)