Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0233.Seq
(797 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117170-1|AAI17171.1| 1714|Homo sapiens collagen, type XXIV, al... 32 2.1
BC113654-1|AAI13655.1| 1714|Homo sapiens collagen, type XXIV, al... 32 2.1
AY244357-1|AAP80185.1| 1714|Homo sapiens alpha 1 type XXIV colla... 32 2.1
AL445427-1|CAI19120.1| 1714|Homo sapiens collagen, type XXIV, al... 32 2.1
AL359971-1|CAI16233.1| 1714|Homo sapiens collagen, type XXIV, al... 32 2.1
AL356059-1|CAH71121.1| 1714|Homo sapiens collagen, type XXIV, al... 32 2.1
AB209686-1|BAD92923.1| 867|Homo sapiens collagen, type XXIV, al... 32 2.1
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 3.6
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 3.6
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 3.6
>BC117170-1|AAI17171.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 P*GPRWXSGFSGVLKNR-EIWPPGKTVVGNLNFPPG*ATGFGLGPGPPGV 796
P G + G G+ N +I PPGK + + PG TG PGPPGV
Sbjct: 1289 PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPG-RTGLAGAPGPPGV 1337
>BC113654-1|AAI13655.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 P*GPRWXSGFSGVLKNR-EIWPPGKTVVGNLNFPPG*ATGFGLGPGPPGV 796
P G + G G+ N +I PPGK + + PG TG PGPPGV
Sbjct: 1289 PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPG-RTGLAGAPGPPGV 1337
>AY244357-1|AAP80185.1| 1714|Homo sapiens alpha 1 type XXIV collagen
precursor protein.
Length = 1714
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 P*GPRWXSGFSGVLKNR-EIWPPGKTVVGNLNFPPG*ATGFGLGPGPPGV 796
P G + G G+ N +I PPGK + + PG TG PGPPGV
Sbjct: 1289 PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPG-RTGLAGAPGPPGV 1337
>AL445427-1|CAI19120.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 P*GPRWXSGFSGVLKNR-EIWPPGKTVVGNLNFPPG*ATGFGLGPGPPGV 796
P G + G G+ N +I PPGK + + PG TG PGPPGV
Sbjct: 1289 PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPG-RTGLAGAPGPPGV 1337
>AL359971-1|CAI16233.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 P*GPRWXSGFSGVLKNR-EIWPPGKTVVGNLNFPPG*ATGFGLGPGPPGV 796
P G + G G+ N +I PPGK + + PG TG PGPPGV
Sbjct: 1289 PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPG-RTGLAGAPGPPGV 1337
>AL356059-1|CAH71121.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 P*GPRWXSGFSGVLKNR-EIWPPGKTVVGNLNFPPG*ATGFGLGPGPPGV 796
P G + G G+ N +I PPGK + + PG TG PGPPGV
Sbjct: 1289 PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPG-RTGLAGAPGPPGV 1337
>AB209686-1|BAD92923.1| 867|Homo sapiens collagen, type XXIV, alpha
1 variant protein.
Length = 867
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 P*GPRWXSGFSGVLKNR-EIWPPGKTVVGNLNFPPG*ATGFGLGPGPPGV 796
P G + G G+ N +I PPGK + + PG TG PGPPGV
Sbjct: 463 PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPG-RTGLAGAPGPPGV 511
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.6
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = -3
Query: 789 GGPGPSPNPVAYPGGKFRFPTTVFPGGQISRFLRTPEKPEXHRGPYGXP 643
GG G P A PGG RFP PGG F P GP G P
Sbjct: 200 GGRGRGRFPGAVPGGD-RFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPP 247
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.6
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = -3
Query: 789 GGPGPSPNPVAYPGGKFRFPTTVFPGGQISRFLRTPEKPEXHRGPYGXP 643
GG G P A PGG RFP PGG F P GP G P
Sbjct: 200 GGRGRGRFPGAVPGGD-RFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPP 247
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.6
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = -3
Query: 789 GGPGPSPNPVAYPGGKFRFPTTVFPGGQISRFLRTPEKPEXHRGPYGXP 643
GG G P A PGG RFP PGG F P GP G P
Sbjct: 200 GGRGRGRFPGAVPGGD-RFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPP 247
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,113,541
Number of Sequences: 237096
Number of extensions: 3647963
Number of successful extensions: 12016
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11960
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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