Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0233.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 380 PSSNVTELKQVPSSSKHQIEQSVQ 451
           PS N +++   P+S  HQ++Q +Q
Sbjct: 56  PSQNPSQMMISPASGIHQMQQLLQ 79


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 639 LKVFRRGPDGIPVFXGSL 692
           ++ F + PD IP F  SL
Sbjct: 394 VRPFLKNPDAIPAFLSSL 411


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 173 LTTYQAQVPRHKEFLSTCIGYF 238
           L   +A +  HK  LS C  YF
Sbjct: 40  LACNEASLKAHKVVLSACSSYF 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,000
Number of Sequences: 438
Number of extensions: 6800
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)