Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0232.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0140 - 8854929-8855201 31 0.34
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 31 0.44
02_05_0029 - 25194827-25195095,25195129-25197970 29 1.8
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 28 2.4
01_02_0007 + 10132380-10133201 28 2.4
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 27 4.1
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 27 4.1
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 27 5.5
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 27 5.5
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491... 26 9.5
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 26 9.5
06_01_0123 + 951808-952196,958017-958122 26 9.5
05_03_0040 - 7646525-7647775 26 9.5
05_03_0039 - 7621613-7622695 26 9.5
05_01_0545 - 4756266-4757510 26 9.5
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 26 9.5
>05_03_0140 - 8854929-8855201
Length = 90
Score = 31.1 bits (67), Expect = 0.34
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 366 RKAKTVCPWNGCWQTVFSWKGLGE 295
R + C W W T+ +W+G+GE
Sbjct: 65 RLPRVQCDWEAWWSTMMAWQGVGE 88
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 220 IRAHWAKTHIDAQKPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHR 354
I +H H Q+P+Q P +N Q PLP P P H+
Sbjct: 179 IPSHMPIVHSQPQQPLQNPGMFNQQLQPPLPQLPRPPNMQPFVHQ 223
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 210 LPSYSCSLGKNTH*CPKAHPKTQPLEQSIPQAPSMKKLFANNHS 341
LP+ SLGK + +++ PL S+ +PS+K L+ N+S
Sbjct: 287 LPNVFGSLGKLEYFSAQSNLFRGPLPSSLSHSPSLKMLYLRNNS 330
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +1
Query: 229 HWAKTHIDAQKPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPP 384
H + H A P P P Q P P +N LP + P F PPP
Sbjct: 8 HLQQPHPQAPPP---PPPQQQQQPVPPSFRNALPVPVDGQIPAPLPFFNPPP 56
>01_02_0007 + 10132380-10133201
Length = 273
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 259 KPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPP 384
+P+ +P P N P+PLP N P +P+ P P P
Sbjct: 103 QPLPQPGPQPNPNPQPLPQPNPNPQPLPQPDPNAPPLPLPQP 144
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 259 KPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPPE*TLP 399
+P+ +P+P NN P P P N P +P+ P P P+ P
Sbjct: 186 QPLPQPDP-NNPQPLPQPDPNAPPQPLPQPDPNSPPQPLPQPDPNTP 231
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 62 RLLAKSNYFVLNHSKLLWTTTPKFFIVGAP 151
RLL+K Y N KLLW F+V P
Sbjct: 669 RLLSKLKYTSANRKKLLWDLRIHHFVVRLP 698
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 205 WGFQVIRAHWAKTHIDAQKPI-QRPNPWNNQFPKPLP*KNCLPTTI 339
WGFQ++ + +P PNP N P P P N + T I
Sbjct: 279 WGFQMVTTRRNVNTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQI 324
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 253 AQKPIQRPNPWNNQFPKPLP*KNCLPTTIPRAH 351
A P + P P Q P P P K+ P T P AH
Sbjct: 577 ALTPPRAPTPTPPQAPLPAPSKSRAPPTPPPAH 609
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 236 QKHTLMPKSPSKDPTLGTINSPSP 307
+ + MP+SPSKD T + PSP
Sbjct: 301 RSYATMPESPSKDSTTAQQSVPSP 324
>07_03_1185 +
24645963-24646316,24647990-24648226,24649027-24649170,
24649296-24649427,24649524-24649811
Length = 384
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 239 KHTLMPKSPSKDPTLGTIN-SPSPF 310
KH L +SPSKD +L +++ P PF
Sbjct: 279 KHLLFNQSPSKDVSLASVSMRPIPF 303
>06_03_0606 -
22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -3
Query: 364 ESQNGVPLEWLLANSFFMEG---AWGIDC 287
+ QNG+PL WL N ++ W ++C
Sbjct: 806 KKQNGIPLSWLSQNFSHLDDDAEPWRVEC 834
>06_01_0123 + 951808-952196,958017-958122
Length = 164
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 368 HGKPKRCALGMVVG 327
HG P+RC LG +VG
Sbjct: 5 HGHPRRCLLGALVG 18
>05_03_0040 - 7646525-7647775
Length = 416
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 259 KPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPPE 387
KP P P PKP P P P+ H P KP P+
Sbjct: 137 KPYPEPKPEPKPEPKPEPKPEPKPKPEPKPHPEPKPDPKPEPK 179
>05_03_0039 - 7621613-7622695
Length = 360
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 259 KPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPPE 387
KPI P P PKP P P P+ H P KP PE
Sbjct: 277 KPIPHPGP--KPKPKPDPKLEPKPHPEPKPHPMPEPEPKPKPE 317
>05_01_0545 - 4756266-4757510
Length = 414
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 105 NFFGRLPPNFSSLVPH*RGARKQIIPRFPY 194
N+F PP+ + +VP G R+ +P PY
Sbjct: 323 NYFTGEPPSCARVVPAADGDRRNCLPNRPY 352
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 279 PLEQSIPQAPS--MKKLFANNHSKGTPFWLSVFQ 374
P +++I PS M L + ++GTPFW V +
Sbjct: 56 PKKKNITNTPSVYMSVLILTDQARGTPFWKLVLK 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,226,170
Number of Sequences: 37544
Number of extensions: 346601
Number of successful extensions: 1041
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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