Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0232.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    31   0.40 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone...    27   6.5  

>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 236 QKHTLMPKSPSKDPTLGTINSPSPFHEKTVCQQ 334
           Q HTL    P K P++ T NS +P  ++  CQQ
Sbjct: 92  QSHTLSEHVPEKKPSISTSNS-APSTKRVACQQ 123


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 262 PIQRPNPWNNQ--FPKPLP*KNCLPTTIPRAHRFGFPCFKPPP 384
           PI +P P+     FPKP+P    +P + P++  F  P   P P
Sbjct: 134 PIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKP 176



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 262 PIQRPNPWNNQ--FPKPLP*KNCLPTTIPRAHRFGFPCFKPPPE 387
           P  +P P+     FPKP+P    +P + P++  F  P   P P+
Sbjct: 70  PKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPK 113



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 259 KPIQRPNPWNNQFPKPLP*KNCL---PTTIPRAHRFGFPCFKPPPE 387
           KP  +P P     PKP P K  L   P  IP+   F  P  KP P+
Sbjct: 179 KPKPKPKPMPKHKPKPFP-KPMLFPKPMPIPKPMPFPKPMPKPMPK 223



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 262 PIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPP 384
           PI +P P+    PKP+P     P   P       P  KP P
Sbjct: 206 PIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMP 246



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 259 KPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPPE 387
           KP+ +P P +   P P P     P  IP+   F  P  KP P+
Sbjct: 215 KPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPK 257



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 274 PNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPPE 387
           P P +  FPKP+P         P    F  P  KP P+
Sbjct: 10  PKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKPK 47



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 259 KPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPP 384
           KP+ +  P +  FP P+P    +P   P+      P  KP P
Sbjct: 19  KPMPKSKPKSEPFPSPMPFPKPMPKPKPKPK--PMPKHKPKP 58



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 259 KPIQRPNPWNNQFPKPLP*KNCLPTTIPRAHRFGFPCFKPPP 384
           KP+ +  P +  FP P+P    +P   P+      P  KP P
Sbjct: 155 KPMPKSKPKSEPFPNPMPFPKPMPKPKPKPK--PMPKHKPKP 194


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +2

Query: 227  LIGQKHTLMPK-SPSKDPTLGTINSPSPFHEKTVCQQPFQ----GHTVLAFRVSNPPRN 388
            L G + T  P  +PSK+ +LGT  +PSP    TV   PF+    G      RVS P  N
Sbjct: 2071 LPGHRTTSRPMLTPSKNFSLGTPPTPSP---STVSTTPFRIYTPGSAPSDARVSRPTSN 2126


>U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 137, isoform a protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 159 GARKQIIPRFPYLANVGLPSYSCSLGKNT 245
           G  +++ P+  YLA++ LPS S ++ K T
Sbjct: 79  GNEEKVAPQTAYLASISLPSTSTAIPKVT 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,601,065
Number of Sequences: 27780
Number of extensions: 281989
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)