Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0232.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.32 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.0  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 276 QPLEQSIPQAPSMKKLFANNHSKGTP 353
           QPL  SIP  PS + +  N +S+  P
Sbjct: 758 QPLSVSIPPPPSAQNVPQNTNSQAIP 783


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 121 YPQIFHRWCPINVG 162
           + Q FH +CP+  G
Sbjct: 423 FQQFFHCYCPVRFG 436


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 398 GRVHSGGGLKHGKPKRCALGMVVGKQF 318
           G  + G  ++ G+P R   G   GK++
Sbjct: 72  GDAYGGLNIRPGQPSRQHAGFEFGKEY 98


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 213 PSYSCSLGKNTH*CPKA 263
           P Y C+L K+   C KA
Sbjct: 413 PKYDCTLEKSQDDCLKA 429


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 213 PSYSCSLGKNTH*CPKA 263
           P Y C+L K+   C KA
Sbjct: 413 PKYDCTLEKSQDDCLKA 429


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 213 PSYSCSLGKNTH*CPKA 263
           P Y C+L K+   C KA
Sbjct: 413 PKYDCTLEKSQDDCLKA 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,246
Number of Sequences: 438
Number of extensions: 3766
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)