Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0230.Seq
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.2  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   4.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   5.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.3  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    24   9.7  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    24   9.7  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    24   9.7  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    24   9.7  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 196  AWRCGPWSPSPPTRGRSAQTLSPTARVR 113
            AWR   WS    T  ++ ++LSP   +R
Sbjct: 2629 AWRLSDWSTEQDTLEKATKSLSPFTSLR 2656


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +1

Query: 349 GFPSGTNPF---PGSVSGPTNLQRANKFG 426
           GFP  T+     PG +SG  +L RANK G
Sbjct: 487 GFPDVTHIIDFGPGGISGVGSLTRANKDG 515


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 174 APLRRREAGLRRHSHRPPEYELVRFQHGFYLLLNFCCS 61
           A L +  A +   S+ P +YE    ++G Y+ L+F CS
Sbjct: 152 AGLVQATASVANPSYAPTKYE----EYGIYVALSFACS 185


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 325 CRYFRK*PENCCHHKEEPRLYPAGWPCSP 239
           C Y    P++C H + +   +P   PC P
Sbjct: 642 CPYLCVLPKSCHHPQVKHNCHPTSEPCPP 670


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 298  SRVTFGNTGSVPENGQDGFPSGTNPFPGSVSGPT 399
            + +TFG  G   ENG++GF        G+ +GPT
Sbjct: 1097 NNLTFGYDG---ENGEEGFAMYETIAGGAGAGPT 1127


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 240 GEQGQPAGYNRGSSLWWQQFSGHF 311
           G Q +       +S WW  F+ HF
Sbjct: 81  GSQSECVSKLESTSTWWLSFTSHF 104


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 348 VLPIFRNAAGISESDPRIVA 289
           VLP F  A  IS S PRI+A
Sbjct: 68  VLPYFNKAHQISLSQPRILA 87


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 374 FRAALVDQQICKGPTSLGGL 433
           +  A V QQI  GPT++ GL
Sbjct: 348 YSTASVPQQISNGPTAVNGL 367


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 304 VTFGNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPG 438
           +T GN    P   + G  +G   FPG  +GP   +  +   G PG
Sbjct: 69  ITEGNAAPPPPGAEGGPGAGFGGFPG--AGPGGARTFHFNMGGPG 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,031
Number of Sequences: 5004
Number of extensions: 34514
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)