Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0230.Seq
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 34 0.057
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 34 0.057
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 33 0.13
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 32 0.23
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 0.30
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 31 0.30
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 0.30
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 31 0.40
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 31 0.53
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 30 0.70
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 30 0.70
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 30 0.70
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 30 0.93
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 30 0.93
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 29 1.2
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 29 1.6
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 29 1.6
AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen prot... 29 1.6
Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 2.1
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 2.1
Z66496-3|CAA91279.2| 570|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 2.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 2.8
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 3.8
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 3.8
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 5.0
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 5.0
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 5.0
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 5.0
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 5.0
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 27 5.0
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 27 6.6
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 23 7.6
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 27 8.7
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 8.7
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 27 8.7
J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 27 8.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 8.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 8.7
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 33.9 bits (74), Expect = 0.057
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSV--SGPTNLQRANKFGGAPG-PGSP 450
GN G +GQDGFP G + PGS +G N G PG PG P
Sbjct: 240 GNAGPAGPSGQDGFP-GQDGAPGSAGPAGQDGFPGNNGSDGQPGAPGGP 287
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPG-PGS 447
G G+ +NGQ GFP G + PG + QR GAPG PG+
Sbjct: 199 GAPGAPGDNGQPGFP-GQDGAPGQPG--ADGQRGAGTPGAPGAPGN 241
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 33.9 bits (74), Expect = 0.057
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSV--SGPTNLQRANKFGGAPG-PGSP 450
GN G +GQDGFP G + PGS +G N G PG PG P
Sbjct: 224 GNAGPAGPSGQDGFP-GQDGAPGSAGPAGQDGFPGNNGSDGQPGAPGGP 271
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPG-PGS 447
G G+ +NGQ GFP G + PG + QR GAPG PG+
Sbjct: 183 GAPGAPGDNGQPGFP-GQDGAPGQPG--ADGQRGAGTPGAPGAPGN 225
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP P
Sbjct: 290 FDPSGAPPSGGPPGPFDPSGAQP-SGGPPGPFNPSGAPPSGGPPGPFDP 337
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP +P
Sbjct: 410 FNPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNP 457
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP +P
Sbjct: 425 FNPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNP 472
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP P
Sbjct: 230 FNPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDP 277
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP P
Sbjct: 320 FNPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDP 367
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP +P
Sbjct: 380 FDPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNP 427
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP +P
Sbjct: 395 FDPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFNP 442
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP P
Sbjct: 440 FNPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDP 487
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG PGP P
Sbjct: 470 FNPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDP 517
Score = 31.1 bits (67), Expect = 0.40
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDGF--PSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP A GG PGP +P
Sbjct: 155 FDPSGAPPSGGPPGLFDPSGAPP-SGGPPGPFGPSGAPPSGGPPGPFNP 202
Score = 31.1 bits (67), Expect = 0.40
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP + A GG PGP +P
Sbjct: 275 FDPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFDPSGAQPSGGPPGPFNP 322
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP + A GG PGP P
Sbjct: 350 FNPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFDP 397
Score = 29.9 bits (64), Expect = 0.93
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP + A GG PGP P
Sbjct: 245 FDPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFDP 292
Score = 29.9 bits (64), Expect = 0.93
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP + A GG PGP P
Sbjct: 335 FDPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFDPSGAPPSGGPPGPFDP 382
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F +G+ P G G PSG P G GP N A GG GP P
Sbjct: 170 FDPSGAPPSGGPPGPFGPSGAPP-SGGPPGPFNPSEAPPSGGPTGPFDP 217
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 FGNTGSVPENGQDG--FPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
F + + P G G PSG P G GP N A GG PGP P
Sbjct: 200 FNPSEAPPSGGPTGPFDPSGAPP-SGGPPGPFNPSGAPPSGGPPGPFDP 247
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G G+ G+DG SG PG+ TN+QR G PGP P
Sbjct: 199 GGPGAPGLGGKDG-QSGNAGVPGAPGKITNIQRPAGLPGVPGPIGP 243
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.30
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G GS + G DG P P P +GP A+ GAPGP P
Sbjct: 228 GPPGSPGQPGADGSPG--QPGPKGPNGPDGQPGADGNPGAPGPAGP 271
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 31.5 bits (68), Expect = 0.30
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G GS + G DG P P P +GP A+ GAPGP P
Sbjct: 227 GPPGSPGQPGADGSPG--QPGPKGPNGPDGQPGADGNPGAPGPAGP 270
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.30
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G GS + G DG P P P +GP A+ GAPGP P
Sbjct: 228 GPPGSPGQPGADGSPG--QPGPKGPNGPDGQPGADGNPGAPGPAGP 271
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGP 441
G G G DG P N PG +GP L+ A G+ GP
Sbjct: 214 GEDGRPGRRGDDGMPGTVNEIPGQ-AGPPGLRGAPGATGSQGP 255
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 340 GQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPE 453
G+ G P+G PG +GP A+ GGAPGP PE
Sbjct: 137 GEAG-PAGAPGAPGP-AGPDGQPGADGQGGAPGPAGPE 172
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 30.3 bits (65), Expect = 0.70
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPG-PGSP 450
G GSV E G+DG P G+ PG G + F G PG PG+P
Sbjct: 144 GENGSVGEKGEDGQP-GSPGKPGE-DGESGTDGEPGFIGFPGFPGAP 188
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 30.3 bits (65), Expect = 0.70
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPE 453
G G G G P+G + +PG SGP +GGA G PE
Sbjct: 267 GPPGEAGPEGPQG-PTGRDAYPGQ-SGPQGEPGLQGYGGAAGEDGPE 311
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 316 NTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPE 453
N G+ P+ GFP G P G G Q + PGP PE
Sbjct: 112 NGGNQPKFPGGGFPDGPFPNGGGPRGGNQCQCTVENSCPPGPAGPE 157
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 30.3 bits (65), Expect = 0.70
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPE 453
G G G G P+G + +PG SGP +GGA G PE
Sbjct: 267 GPPGEAGPEGPQG-PTGRDAYPGQ-SGPQGEPGLQGYGGAAGEDGPE 311
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 316 NTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPE 453
N G+ P+ GFP G P G G Q + PGP PE
Sbjct: 112 NGGNQPKFPGGGFPDGPFPNGGGPRGGNQCQCTVENSCPPGPAGPE 157
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 29.9 bits (64), Expect = 0.93
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFG-GAPGPGSPEAF 459
G G+ P GQ G P FP GP F GAPGPG P +
Sbjct: 280 GMPGAFPP-GQGG-PGMPGSFPPGAPGPGGPGMPGSFAPGAPGPGGPGGY 327
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 29.9 bits (64), Expect = 0.93
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFG-----GAPGPGSPE 453
GN G + E+G++G+P G PG P L A G G GP P+
Sbjct: 176 GNPGRIGEHGREGYP-GQQGIPGEPGKPGKLGEAGPNGRDGTRGQKGPIGPK 226
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPG-PGSP 450
GN G GQDGFP G + PG +GP G+ G PG+P
Sbjct: 224 GNAGPAGPAGQDGFP-GQDGAPGP-AGPAGQDGFPGNAGSDGQPGAP 268
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAP-GPGSP 450
G G+ +NGQDG P G + PG+ Q + GAP GPG+P
Sbjct: 183 GQPGAPGDNGQDGAP-GQDGQPGAPG-----QDGQRGSGAPGGPGAP 223
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAP-GPGSP 450
G G+ +NGQDG P G + PG+ Q + GAP GPG+P
Sbjct: 195 GQPGAPGDNGQDGAP-GQDGQPGAPG-----QDGQRGSGAPGGPGAP 235
>AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen protein
88 protein.
Length = 302
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS-----------GTNPFPGSVSGP-TNLQRANKFGGAPGPGSP 450
G GS GQDG P G + PG P N QR N GAPGP P
Sbjct: 160 GQAGSPGAPGQDGQPGGPGAQGDAGAPGNDGTPGQDGAPGQNGQRGNGAAGAPGPQGP 217
>Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical
protein R07E3.5b protein.
Length = 455
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -3
Query: 283 KEEPRLYPAGWPCSPARCTRFTWPWNALHAWRCGPWSPSPPTRGRSAQTLSPTARVR 113
K + RL A W S R+ W A C W TRG + ++S RV+
Sbjct: 290 KYDTRLTDAFWNSSAQSYGRYLWSMMTSWAIICDVWYLPAMTRGENEDSISFAKRVK 346
>Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical
protein R07E3.5a protein.
Length = 512
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -3
Query: 283 KEEPRLYPAGWPCSPARCTRFTWPWNALHAWRCGPWSPSPPTRGRSAQTLSPTARVR 113
K + RL A W S R+ W A C W TRG + ++S RV+
Sbjct: 347 KYDTRLTDAFWNSSAQSYGRYLWSMMTSWAIICDVWYLPAMTRGENEDSISFAKRVK 403
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 287 VATILGSLSEIPAAFLKMGKTGSPLGLTHFRAALVDQQICKGPTSLGGLRARVRPRP 457
+ + S + IP +F ++ K S +G THF + I SL + +RP P
Sbjct: 140 IQPVSSSSNNIPGSFQRLIKAVSNIGSTHFNITPIPPTIRNLANSLFPTPSPIRPLP 196
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Frame = +1
Query: 331 PENGQDGF-------PSGTNPFPGSVSGPTNLQRANK--FGGAPGPGSP 450
P+ G+D F P G PG+ P N + FGG PGP P
Sbjct: 130 PQTGRDSFCITCPAGPPGPAGTPGAPGAPGNAGAPGQDSFGGGPGPAGP 178
>Z66496-3|CAA91279.2| 570|Caenorhabditis elegans Hypothetical
protein E04D5.1a protein.
Length = 570
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 340 GQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPE 453
G G PS P PG+ + RAN G AP P P+
Sbjct: 479 GSAGPPSAAAPTPGNQNQRPAQPRANGNGNAPQPFRPQ 516
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 28.3 bits (60), Expect = 2.8
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Frame = -1
Query: 414 GPLQICWSTNAARKWVS-PRGEPVLPIFRNAAGISESDPRI----VATTRRSRGC-TRRV 253
GP C + N S P+G P +P G+ + P + +A R S GC T
Sbjct: 113 GPTCNCNADNKCPAGPSGPKGVPGVPGLDGVPGL-DGVPGVGADDIAPQRESVGCFTCPQ 171
Query: 252 GPVH------RPAVRALPGP-GMRCTPGAVG 181
GPV RP R LPGP G PG G
Sbjct: 172 GPVGPPGALGRPGPRGLPGPRGQNGNPGRDG 202
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G G E G G P+G P PG GP N G P PG+P
Sbjct: 167 GPEGPNGEPGNKG-PAGP-PGPGGKPGPAGPPGENGNNGEPQPGAP 210
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 2.8
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS--GTN-------PFPGSVSGPTNLQRANKFGGAPGPGSP 450
GN G GQDG P GTN P P GP + GGA PG P
Sbjct: 223 GNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPP 277
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNP-FPGSVSGPTNLQRANKFGGAPGPGSP 450
G G +G+ G P+ +P P SGP + G PGP P
Sbjct: 166 GPAGPAGPDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGP 212
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 313 GNTGSVPENGQDGF--PSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G G NG G P+G P PG GP N G P PGSP
Sbjct: 162 GPPGPEGPNGTAGNKGPAGP-PGPGGKPGPAGPPGENGRNGEPQPGSP 208
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS--GTNPFPGS-----VSGPTNLQRANKFGGAPG 438
G G+ +NG DG+P G +PGS GP+ + + G PG
Sbjct: 656 GEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPG 704
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS--GTNPFPGS-----VSGPTNLQRANKFGGAPG 438
G G+ +NG DG+P G +PGS GP+ + + G PG
Sbjct: 913 GEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPG 961
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS--GTNPFPGS-----VSGPTNLQRANKFGGAPG 438
G G+ +NG DG+P G +PGS GP+ + + G PG
Sbjct: 912 GEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPG 960
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 355 PSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPE 453
P+G PG GP+ + GG PGP P+
Sbjct: 138 PAGAPGAPGP-QGPSGAPGQDAVGGGPGPAGPQ 169
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 355 PSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
P+G PG P N R + GGA PG P
Sbjct: 166 PAGPPGAPGQAGAPGNDGRPGQSGGAAIPGPP 197
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS--GTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G+ G G DG P G+ PG+ P + G A GPG P
Sbjct: 158 GSAGPAGPKGPDGRPGQPGSAGHPGAPGQPGSKGNNGAPGAAGGPGQP 205
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 252 GPVHRPAVRALPG---PGMRCTPGAVGL-GAPLRRREAGL 145
GP P R PG PG+ G GL GAP R+ E GL
Sbjct: 444 GPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGL 483
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 252 GPVHRPAVRALPG---PGMRCTPGAVGL-GAPLRRREAGL 145
GP P R PG PG+ G GL GAP R+ E GL
Sbjct: 443 GPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGL 482
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 252 GPVHRPAVRALPG---PGMRCTPGAVGL-GAPLRRREAGL 145
GP P R PG PG+ G GL GAP R+ E GL
Sbjct: 443 GPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGL 482
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 252 GPVHRPAVRALPG---PGMRCTPGAVGL-GAPLRRREAGL 145
GP P R PG PG+ G GL GAP R+ E GL
Sbjct: 444 GPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGL 483
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 252 GPVHRPAVRALPG---PGMRCTPGAVGL-GAPLRRREAGL 145
GP P R PG PG+ G GL GAP R+ E GL
Sbjct: 480 GPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGL 519
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G+ GS + G +G P G N PG N+ GG PG P
Sbjct: 119 GSKGSTGDKGPNG-PPGQNGPPGWAGRDGNIGPQGTPGGRGEPGGP 163
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPG--SVSGPTNLQRANKFGGAPG 438
G+ G+ E+GQDG P P PG SGP Q GAPG
Sbjct: 509 GDPGTDGEHGQDGSPGIQGP-PGRDGTSGPDG-QPGVSAPGAPG 550
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 411 GQQVWGGSGPGFARG 455
G+ WGG GPG+ RG
Sbjct: 44 GRPGWGGGGPGWGRG 58
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 23.0 bits (47), Expect(2) = 7.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 231 VRALPGPGMRCTPGAVGLGAP 169
V ++ PG R PG VGL P
Sbjct: 298 VGSMGPPGNRGAPGRVGLNGP 318
Score = 22.2 bits (45), Expect(2) = 7.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 306 DPRIVATTRRSRGCTRRVGPVHRPAVRALPGP 211
DP I+ T+ SRG GP P PGP
Sbjct: 260 DPGIM--TQDSRGVEGPSGPSGPPGPMGFPGP 289
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSP 450
G G +GQ G G P P G + GGA GPG P
Sbjct: 271 GPPGLAGPDGQPGHGGGGQPGPQGPPGDDG--HPGEDGGAGGPGQP 314
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAP-GPGS 447
G G G DG P P P GP A G P GPG+
Sbjct: 224 GPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPGT 269
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAP-GPGS 447
G G G DG P P P GP A G P GPG+
Sbjct: 224 GPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPGT 269
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSG---PTNLQRANKFGGAPGPGSP 450
G GS G+DG G + PGS G ++ + F G GPG P
Sbjct: 538 GRRGSGGPEGRDGRGQGPDFGPGSQGGRGQDSDSGSQDAFPGRRGPGGP 586
>J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein.
Length = 324
Score = 26.6 bits (56), Expect = 8.7
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Frame = -1
Query: 414 GPLQICWSTNAARKWVS-PRGEPVLPIFRNAAGISESDPRI----VATTRRSRGC-TRRV 253
GP C + N S P+G P +P G+ + P + + R S GC T
Sbjct: 113 GPTCNCNADNKCPAGPSGPKGVPGVPGLDGVPGL-DGVPGVGADDIVPQRESVGCFTCPQ 171
Query: 252 GPVH------RPAVRALPGP-GMRCTPGAVG 181
GPV RP R LPGP G PG G
Sbjct: 172 GPVGPPGALGRPGPRGLPGPRGQNGNPGRDG 202
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAP-GPGS 447
G G G DG P P P GP A G P GPG+
Sbjct: 224 GPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPGT 269
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAP-GPGS 447
G G G DG P P P GP A G P GPG+
Sbjct: 224 GPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPGT 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,244,888
Number of Sequences: 27780
Number of extensions: 235600
Number of successful extensions: 961
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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