Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0229.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.6  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   8.7  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 309 MATNNTNGHCENYHKMESLKKLFQPVHEK 395
           + T + N H   +H  E   +  QP H++
Sbjct: 157 LTTQSMNNHHMGHHMQEQHPQHHQPHHQQ 185


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 309 MATNNTNGHCENYHKMESLKKLFQPVHEK 395
           + T + N H   +H  E   +  QP H++
Sbjct: 159 LTTQSMNNHHMGHHMQEQHPQHHQPHHQQ 187


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 328 LVLFVAISNII*YCKQLKYAFKYDHL 251
           LV F A+  +     Q KY  KYD++
Sbjct: 6   LVAFAAVLGLALARPQEKYTTKYDNI 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,285
Number of Sequences: 336
Number of extensions: 2108
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)