Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0229.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679...    28   5.6  
02_04_0579 - 24050219-24050254,24050255-24050398,24051566-24051706     28   5.6  
03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777     28   7.4  

>03_02_0249 -
           6792210-6792215,6794332-6794607,6794692-6795180,
           6795832-6795900,6797316-6797403,6798193-6798224,
           6799277-6799308,6799412-6799646
          Length = 408

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 375 TASSGTPSCGSSRNARWCCLSPSQI--LFNTVSS*NTLSNMIT 253
           ++S   P C  + N  WC L P Q+  L N VS  + L N+ T
Sbjct: 106 SSSRRRPKCDVATNLHWCHLHPFQMSTLSNKVSLSSNLLNLQT 148


>02_04_0579 - 24050219-24050254,24050255-24050398,24051566-24051706
          Length = 106

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 408 KFRPPSRARAGTASSGTPSCGSSR 337
           +FRPPS A A  ASS +  C + R
Sbjct: 9   QFRPPSTAAAAAASSASRRCAARR 32


>03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777
          Length = 124

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 309 MATNNTNGHCENYHKMESLKKLFQPVHEKVDE 404
           M T+   GHC +Y  + SL+++      K+DE
Sbjct: 1   MTTSRPTGHCTSYESVASLEEVQNKNTHKLDE 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,762
Number of Sequences: 37544
Number of extensions: 218783
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)