Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0228.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 33 0.22
12_01_0193 + 1436165-1437247 31 1.2
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028 31 1.2
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 29 2.7
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 3.5
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 29 3.5
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 29 4.7
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368... 28 6.2
02_01_0406 - 2958933-2962076 28 6.2
01_05_0603 - 23580283-23580627,23580970-23581174,23581286-235814... 28 6.2
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 28 8.2
07_03_1784 - 29492511-29492804,29492913-29492999,29493076-294932... 28 8.2
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 28 8.2
06_03_0639 + 23055223-23055678,23055788-23056627 28 8.2
01_06_1424 - 37269397-37270299 28 8.2
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 263 DDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSL 442
D K+ +++L+++++ RE A++K K EEE K+ +E + L + SL
Sbjct: 406 DQEKELKALQEAELRRLEETAARE--AALEKQKQEEEERRKKQLEEEELESSLASKQASL 463
Query: 443 P 445
P
Sbjct: 464 P 464
>12_01_0193 + 1436165-1437247
Length = 360
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 329 RENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHR 487
+E KA KA E ++ N D A+ IL + S+P +TV K C T+ R
Sbjct: 43 QEKEKARQKAIRAE--IKRFRANQDAAEAILRKRKASMPPSTVTKFCTDTDLR 93
>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
Length = 341
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 467 IFSQQWPLVNLDPLAEESSLPHLSF 393
IF+QQW L+NLD A E + L F
Sbjct: 151 IFNQQWKLINLDLSANEKEVAMLDF 175
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 305 KKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEH 484
K+ +K W N +A+ +A + EK+ D+AK+ + +ED + K E +
Sbjct: 178 KERKKKWDEHNQEAISEALKQLNEFEKKHSKSDDAKQKMAREDLQSRLEYLRKQAEGYDD 237
Query: 485 RGQRICI 505
RG I I
Sbjct: 238 RGPVIDI 244
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 260 KDDTKDYDVAAKSQLKKIQK--IWVRENYKAM-DKAKAEEENTEKRSQNLDEAKKILLQE 430
++D ++ + K Q K+ ++ + RE+ K + K K E+ TEK + +DE+ K + +
Sbjct: 375 QEDLENNMKSCKDQFKEFERKDVKYREDLKHLKQKIKKLEDKTEKDTSKIDESTKEVEES 434
Query: 431 DPSLPK 448
+P+
Sbjct: 435 SSLIPQ 440
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/76 (25%), Positives = 30/76 (39%)
Frame = +2
Query: 263 DDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSL 442
DD + D +AK KK K +DK + E ++ + KK L+E+P
Sbjct: 440 DDGEKVDASAKKSKKKKSKAEADGEAMDLDKPSNVADEAEPGTEKKKKKKKHKLEEEPQE 499
Query: 443 PKATVVKICETTEHRG 490
+ +V E G
Sbjct: 500 QEKSVAHANGDAEENG 515
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 263 DDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSL 442
D K+ +++L++++ RE A+ K K EEE ++ +E + L + SL
Sbjct: 435 DREKELKAEQEAELRRLEAAAERE--AAIAKQKQEEEEKRRKQLEEEELESKLAAKQASL 492
Query: 443 PK 448
PK
Sbjct: 493 PK 494
>02_01_0507 -
3682383-3682703,3682830-3682970,3683071-3683147,
3683835-3683901
Length = 201
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 487 WSEDMHQRWVHRLRRQG 537
W E++H+R+VH +RR G
Sbjct: 3 WPEELHRRFVHAVRRLG 19
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 511 WVHRLRRQGKSLGIPDPGVMALG 579
WVH++R +GK + + DP + G
Sbjct: 983 WVHKMRSEGKQIEVLDPTLRGTG 1005
>01_05_0603 -
23580283-23580627,23580970-23581174,23581286-23581407,
23581493-23581675
Length = 284
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 562 QGQECPEIYLGAGDDVPISDAYPLTTVFS 476
+G CP + LG GD V + YPL + S
Sbjct: 194 RGDYCPSLKLGEGDYVMPKEKYPLWNLIS 222
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 233 AISHNLCYSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEK 385
+I N +TK+ D +S +KK+ + R+ K + KA+E+ EK
Sbjct: 318 SIRDNQTKLNSETKEDDCNTQSDIKKVSRSARRKKLKRQLRQKAKEQLKEK 368
>07_03_1784 -
29492511-29492804,29492913-29492999,29493076-29493222,
29493522-29493690,29493777-29494015,29494111-29494356,
29494419-29495084
Length = 615
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +2
Query: 296 SQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICET 475
SQ+ K RE+ D+ + +EE +K Q+L K L+ PK T++ ++
Sbjct: 297 SQIHSATKHDQREDDDDTDEDEDDEEEEQKMQQHLAPQYKHLITIKAGKPKGTLLDALQS 356
Query: 476 TEHRGQRICIRD 511
+ +R+ + +
Sbjct: 357 DPEKVRRLSLSE 368
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = -1
Query: 236 WLFASMMHCFQYCLEXXLFRTITCIVIAILIRGIYLGQAKVSNVRHVERLLTNY 75
W F + CF L+ L ++A ++ G + + NV +E ++ Y
Sbjct: 344 WSFGKLALCFALLLQFFLLDLAAADIVAFVVAGFHQCRYGYKNVADLEGVVAGY 397
>06_03_0639 + 23055223-23055678,23055788-23056627
Length = 431
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 593 ERTVVPSAITPGSGMPRDLPWRRRRCTHL*CISSDH 486
+R V PSA TPG +P L W R T I S H
Sbjct: 17 QRVVAPSAATPGGALP--LSWLDRYPTQRALIESLH 50
>01_06_1424 - 37269397-37270299
Length = 300
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 263 DDTKDYDVAAKSQLKKIQKI--WVRENYKAMDKAKAEEENTEKRSQNLDEAKK 415
DD K +AA + K ++ WV E A + A EE+ E + D+ KK
Sbjct: 230 DDDKQAGIAAMRRFKSGRRTASWVEEAIAAAEAAGEEEQQQENDAAADDDEKK 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,442
Number of Sequences: 37544
Number of extensions: 357843
Number of successful extensions: 931
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -