Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0226.Seq
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 127 1e-30
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 127 1e-30
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 127 1e-30
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 127 1e-30
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 127 1e-30
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 84 1e-17
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 43 4e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 3e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 29 0.48
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 251 QEKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKXHRLXRE 370
++K Y+TP LAVL++YKV+++G RL RE
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 387 CXAGVFXAVMXDRNYCXKCH 446
C A F A DR YC +CH
Sbjct: 124 CGASTFMANHKDRLYCGRCH 143
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 127 bits (307), Expect = 1e-30
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 251 QEKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKXHRLXRE 370
++K Y+TP LAVL++YKV+++G RL RE
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 387 CXAGVFXAVMXDRNYCXKCH 446
C A F A DR YC +CH
Sbjct: 124 CGASTFMANHKDRLYCGRCH 143
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 84.2 bits (199), Expect = 1e-17
Identities = 35/70 (50%), Positives = 51/70 (72%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
M VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 192 IQXESTLHLV 221
++ S LHLV
Sbjct: 61 LEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 39 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTL 212
GK LE+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXE 203
+K + + V+ ++ +K I I +QRLI+AG+ L+D +L Y IQ
Sbjct: 8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67
Query: 204 STLHLV 221
++HLV
Sbjct: 68 HSIHLV 73
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 29.1 bits (62), Expect = 0.48
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 39 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTLHL 218
GK + ++ P DT+ + K + + G P + L +D TL+DY I +L +
Sbjct: 11 GKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 238 ALRNAREELLHTQEDQAQXEXGQTSRPQVLQGRRER*XPPSXARV 372
A N +E HT D+++ E Q S V R+E+ P + V
Sbjct: 52 AEENLNDEANHTSSDKSKSEDYQPSNVNVWALRKEKMIPKKHSHV 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,785
Number of Sequences: 5004
Number of extensions: 26634
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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