Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0225.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    24   0.94 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   8.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.7  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 224 RNSL*RGTCAWYVVRYGGVECARSSPNVADTVLFTIIIQVITNLNF 87
           +N+  + T  W  +RY      + S  + + + + II+   TNL F
Sbjct: 131 KNARVKNTALWKQLRYEHYRLYQLSVLIDNNMSYIIIVSFATNLYF 176


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 222 KFLMTRYLCLVRGEIRRRGVRKVITKR 142
           K    +YL  V+ E++ RGV  +I K+
Sbjct: 164 KLKKMKYLVEVQDEVKPRGVLNIIPKQ 190


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 194 WYVVRYGGVECARSSPN 144
           W    YGGV+  R +PN
Sbjct: 67  WNESEYGGVKDLRITPN 83


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 194 WYVVRYGGVECARSSPN 144
           W    YGGV+  R +PN
Sbjct: 67  WNESEYGGVKDLRITPN 83


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 194 WYVVRYGGVECARSSPN 144
           W    YGGV+  R +PN
Sbjct: 67  WNESEYGGVKDLRITPN 83


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 194 WYVVRYGGVECARSSPN 144
           W    YGGV+  R +PN
Sbjct: 67  WNESEYGGVKDLRITPN 83


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 194 WYVVRYGGVECARSSPN 144
           W    YGGV+  R +PN
Sbjct: 67  WNESEYGGVKDLRITPN 83


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 638 LIYSFFSSCAMFCYLHATLQC 576
           LI      CA FC L A   C
Sbjct: 2   LILQIAHLCAQFCLLAAIFTC 22


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory
          receptor candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 26 YCFNFYV 6
          YCFN+YV
Sbjct: 76 YCFNYYV 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,984
Number of Sequences: 336
Number of extensions: 3085
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)