Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0225.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 33 0.027
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 27 1.8
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.8
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 27 2.3
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 3.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 4.1
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 26 5.4
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 7.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 9.4
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.4
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 9.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.4
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 33.5 bits (73), Expect = 0.027
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = -2
Query: 299 KSVTLIAILELIFMDVVMKYPMHVERNSL*RGTCAWYVVRYGGVECARSSPNVADTVLFT 120
KS+ L+AI+ L+F +K M V NS+ G+ + + Y GV A++SP D+V+
Sbjct: 12 KSLGLLAIVLLLFGFYSLKSSMPVYSNSI--GSPSAHSSSYKGVSKAKTSPQDPDSVVML 69
Query: 119 II 114
I+
Sbjct: 70 IV 71
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 503 GENFPSSDPSDQTPKSQDHDDNNRCTEVSRVD 598
G P P+D T DHD NN E D
Sbjct: 244 GFELPPDQPADLTTALTDHDTNNVAEEAQMTD 275
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 135 YSAFHNNHSGNHKPKFLTWLFHVS 64
Y F N + H + L+WLFH+S
Sbjct: 558 YEGFQNYYYSCHNGRKLSWLFHLS 581
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 569 YCHHDPDFWASDHLDLNSESFLRCFVEYFXSLSLYCPCTLCSI 441
YC++ ++W SD +N+ R F+E+ Y P L +
Sbjct: 516 YCNNGLEYWGSDSQGVNTTR--RFFLEFMSFFHRYTPIALYEV 556
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 280 AINVTDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQ 459
++ T + +Q LN T +S +EN SKPS+ + S++HQI+
Sbjct: 56 SVRETQRNRKFSSLQKHLNTETPSFS-VS-IENPSKPSAAFNDASLGKKSTEHQIDGIRN 113
Query: 460 GQYN 471
G N
Sbjct: 114 GSSN 117
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +1
Query: 124 KSTVSATFGDDLAHSTPPYLTTYQAQVPRHKEFLSTC-IGYFXXXXXXXXXXXAINVTDL 300
K +V DDLA +TP L + Q+ K+ +S Y +++ ++
Sbjct: 70 KQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPAEI 129
Query: 301 RHRLGGIQNQLNEATRHCQDI--SYLENISKPSSNVTE 408
R ++ I ++ E + + + ++ ISK + T+
Sbjct: 130 REKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTD 167
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 449 KVYRDNITKAX*STLQNIGENFPSSDP 529
+V +D +T A +++NI ++ P+S+P
Sbjct: 197 RVQQDQLTSASERSIENIADDIPASEP 223
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 243 VPNARRKKFLMTRYLCLVRGEIRRRGVRKVITKRR*YSAFHNNHSG---NHKPKF 88
+P +++KF+ T +L + + + + +TKR+ Y +N + H PKF
Sbjct: 657 IPERKKEKFIRTVFLNALEVQAVNSKLAEALTKRQNYKPIVDNIADIFLEHVPKF 711
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 352 CQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEXKYSTKHRRKLSE 519
C+ + EN+ S V E++Q S+ H I+ + Q N S H++K ++
Sbjct: 190 CESANSTENVCFSVSTVDEIQQRHPSAGHSIDSTCQS--NSFLEGDSATHKKKKTD 243
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 369 VANILA-MSGRFIQLILDATQSMSQVGDVDR 280
+ N+LA + IQ+ LD +++ +VG++DR
Sbjct: 424 LCNLLACQDNKIIQVALDGIENILRVGELDR 454
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 241 TQCTSKEIPYDAVPVLGTW*DTAAWSAQGHHQTS 140
T C +P AV ++G + D WS+ H+ S
Sbjct: 202 TLCDMLPVPQFAVRLMGLYFDNVGWSSHIIHRPS 235
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.0 bits (52), Expect = 9.4
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = +2
Query: 137 QRRLVMTLRTPRRRISPRTKHRYRVIRNFFRRALGTSSQHP*R*APVSRSTSPT*DIDWV 316
+ RLV LR P+ ++ KH R + T QH + R TS + V
Sbjct: 872 KNRLVSLLRRPKHKV----KHAKVETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPV 927
Query: 317 ASKIN*MKRP 346
SKIN M P
Sbjct: 928 ESKINLMVAP 937
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 491 LQNI-GENFPSSDPS--DQTPKSQDHDDN 568
++N+ E FPS S +Q+PK D DDN
Sbjct: 73 IENLHSETFPSDYTSFLNQSPKKNDFDDN 101
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/72 (25%), Positives = 28/72 (38%)
Frame = +1
Query: 343 TRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEXKYSTKHRRKLSEF 522
TR + S PSS+ + PSSS + S + + S S+ S+
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKS 198
Query: 523 RSK*SDAQKSGS 558
S S + KS +
Sbjct: 199 SSSSSSSSKSSA 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,237
Number of Sequences: 5004
Number of extensions: 51779
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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