Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0225.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0402 - 2934074-2937217 31 0.79
02_01_0403 - 2938242-2941334 30 1.8
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534... 29 2.4
01_05_0613 - 23659388-23659813,23659924-23660308,23660482-23660555 29 4.2
01_06_0576 - 30365903-30366328,30367262-30367640,30368215-303684... 28 5.6
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 5.6
05_02_0127 - 6872780-6872835,6872943-6873026,6873501-6873784,687... 28 7.4
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 28 7.4
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510... 27 9.7
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 27 9.7
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 27 9.7
01_06_0577 - 30371443-30371781,30373863-30374087 27 9.7
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 27 9.7
>02_01_0402 - 2934074-2937217
Length = 1047
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 286 NVTDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKH 438
N+T LR + QL+E + + +S+L + +N+T Q+ SSK+
Sbjct: 373 NLTALRLSFNNFRGQLSEKIGNLKSLSFLSLVKNSLANITSTLQMLQSSKN 423
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 286 NVTDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKH 438
N+T LR G QL+E + Q +S+L ++ +N+T QV S ++
Sbjct: 357 NLTALRLSYNGFHGQLSERIGNLQYLSFLSIVNISLTNITRTIQVLQSCRN 407
>01_05_0770 -
25052100-25052525,25052718-25053042,25053220-25053464,
25053582-25054061
Length = 491
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 569 YCHHDPDFWASDHLDLNSESF 507
+ HHDPD W SD + E F
Sbjct: 395 FIHHDPDIWGSDVNEFKPERF 415
>01_05_0613 - 23659388-23659813,23659924-23660308,23660482-23660555
Length = 294
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 569 YCHHDPDFWASDHLDLNSESF 507
+ HHDPD W SD + E F
Sbjct: 198 FIHHDPDSWGSDVHEFKPERF 218
>01_06_0576 -
30365903-30366328,30367262-30367640,30368215-30368459,
30368819-30369039,30369786-30370074
Length = 519
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 563 HHDPDFWASDHLDLNSESF 507
HHDP W D + N E F
Sbjct: 425 HHDPSIWGQDAIKFNPERF 443
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 491 LQNIGENFPSSDPSDQTPKSQDHDDNNRCTEV 586
L+N+G + SD SD + D+NN T+V
Sbjct: 139 LENVGHSSSDSDSSDSDDEGDSSDNNNLKTKV 170
>05_02_0127 -
6872780-6872835,6872943-6873026,6873501-6873784,
6874403-6874568,6876724-6876906,6877400-6877505,
6877620-6877775,6878882-6878899
Length = 350
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 103 IT*MIIVKSTVSATFGDDLAHSTP 174
I+ M + STV+ATFGDDL + P
Sbjct: 248 ISGMDVDASTVNATFGDDLGNGGP 271
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 569 YCHHDPDFWASDHLDLNSESF 507
+ HHDP+ W SD + E F
Sbjct: 446 FIHHDPEIWGSDVHEFKPERF 466
>04_04_0577 +
26349205-26349669,26350384-26350482,26350887-26351064,
26351900-26352087,26352335-26352373
Length = 322
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 146 LVMTLRTPRRRISPRTKHRYRVIRNFF 226
++ +RT RR SPRT+ + RV +N F
Sbjct: 135 VLAVVRTVRRFTSPRTQKKRRVSKNIF 161
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 638 LIYSFFSSCAMFCYLHATLQCNGYCHHDPDFWASDHLDLNSESF 507
L+Y F + ++F LHA GY DP+++ + L+ S+ +
Sbjct: 657 LVYDFIPNGSLFGTLHADASTFGYL--DPEYYHTGQLNKKSDVY 698
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 394 SNVTELKQVPSSSKHQIEQSVQGQYNES 477
S+++E +VPSSS H E S GQ +S
Sbjct: 419 SSISEDLEVPSSSSHASEPSSSGQAKKS 446
>01_06_0577 - 30371443-30371781,30373863-30374087
Length = 187
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 563 HHDPDFWASDHLDLNSESF 507
HHDP W D + N E F
Sbjct: 122 HHDPSIWGGDASEFNLERF 140
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 569 YCHHDPDFWASDHLDLNSESF 507
+ HHDPD W D + N F
Sbjct: 362 FIHHDPDIWGKDAGEFNPGRF 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,743,597
Number of Sequences: 37544
Number of extensions: 312442
Number of successful extensions: 805
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -