Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0225.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 388 PSSNVTELKQVPSSSKHQIEQSVQ 459
           PS N +++   P+S  HQ++Q +Q
Sbjct: 56  PSQNPSQMMISPASGIHQMQQLLQ 79


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = -2

Query: 434 FEDEGTCLSSVTLLEGFEIFSK*LISWQCLVASFN*FWMPPNLCLKSVTLIAILELIFMD 255
           F D G  L  +TL +   ++   L         F+   MP N+ ++     ++L  I + 
Sbjct: 97  FNDFGGRLKYLTLTDASRVWMPDLFFSNEKEGHFHNIIMP-NVYIRIFPNGSVLYSIRIS 155

Query: 254 VVMKYPMHVERNSL*RGTCAWYVVRYG 174
           + +  PM+++   L R  C+  +  YG
Sbjct: 156 LTLSCPMNLKLYPLDRQVCSLRMASYG 182


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = -2

Query: 434 FEDEGTCLSSVTLLEGFEIFSK*LISWQCLVASFN*FWMPPNLCLKSVTLIAILELIFMD 255
           F D G  L  +TL +   ++   L         F+   MP N+ ++     ++L  I + 
Sbjct: 97  FNDFGGRLKYLTLTDASRVWMPDLFFSNEKEGHFHNIIMP-NVYIRIFPNGSVLYSIRIS 155

Query: 254 VVMKYPMHVERNSL*RGTCAWYVVRYG 174
           + +  PM+++   L R  C+  +  YG
Sbjct: 156 LTLSCPMNLKLYPLDRQVCSLRMASYG 182


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 234 HWVLHHNIHKDKL 272
           HW+  H++ KD+L
Sbjct: 119 HWIGDHDVDKDEL 131


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 181 LTTYQAQVPRHKEFLSTCIGYF 246
           L   +A +  HK  LS C  YF
Sbjct: 40  LACNEASLKAHKVVLSACSSYF 61


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +2

Query: 509  NFP-SSDPSDQTPKSQDHDDNN 571
            N P S  P    P  ++HD NN
Sbjct: 1850 NIPVSGSPEPPPPPPRNHDQNN 1871


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,839
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)