Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0224.Seq
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 97  DDVSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVT 252
           +DV  IIK+ ++  +G  T Y H +  QW    VE    +L    KPYKYVVT
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVT 58



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = +3

Query: 270 NGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 377
           +G+GL+ S+  YW+  TD S   RWE KTM  IV V
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYV 101


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 258 ILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 377
           I ++ G G  T+  C WD   DG  T R+   +++C V V
Sbjct: 78  IAEQCGNGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLV 117


>Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.12 protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 238 KYVVT*QYCRRMVQDCIQVLLVIGIT 315
           KY+VT  YC+ ++QDC+ VL +I  T
Sbjct: 217 KYLVT--YCQTVLQDCLHVLDMINST 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,827,076
Number of Sequences: 27780
Number of extensions: 241397
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)