Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0223.Seq
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   7.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   7.2  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   9.5  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 222 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSK 124
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 641 GEQKQEGKMPQKRE*GRHGNVEYSYSSFFNIIEAFIRVIVS*AD 510
           G+ K+  K    +E   +G  +YSYS+  N++    R  VS  D
Sbjct: 8   GDSKEPPKHGNSKEKPNYGQSQYSYSAMSNLVTQADRRFVSRRD 51


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 159 SPRSLIVDSCSKLEQHSTLSRSILLI 82
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 28  VKSAHFLTNRPKSAKSLINQKNRP 99
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 460 FPRKVPPDA-PCSGALSAAGVVVTRSVSRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKS 284
           + RKV     P +  +S A      SVSR +    + R  R +P  +  VR LSP   +S
Sbjct: 76  YTRKVSSRTDPSTSTISNARQHPRNSVSRLSRSSSNVRQQRDIPKQNFKVRPLSPLRGQS 135

Query: 283 GAPFR 269
            A  R
Sbjct: 136 PASLR 140


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 216 MVHVVGHRPDRRFFAL 169
           M+++VG +P R FFAL
Sbjct: 274 MIYMVGRKPKRSFFAL 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,175
Number of Sequences: 5004
Number of extensions: 64433
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)