Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0223.Seq
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    31   1.4  
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     30   1.9  
08_02_0934 + 22747742-22748644                                         29   4.3  
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    28   7.5  
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397...    28   9.9  
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176           28   9.9  
03_02_0371 + 7858170-7859624                                           28   9.9  

>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 397  VTRSVSRYTCQRPSA-RSFRFLPFLSRHVRRLSPSSSK 287
            V   V  Y CQ P   ++FRF+   SRH R+   SS K
Sbjct: 1306 VHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343


>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 364 RPSARSFRFLPFLSRHVRRLSPSSSKSGAP 275
           R SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 191 RRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>08_02_0934 + 22747742-22748644
          Length = 300

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 388 SVSRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSGA 278
           SV R    +P+  SF  LPF+ +  R   PSSS  G+
Sbjct: 2   SVERDGRDQPNIDSFSQLPFIRQAAREKPPSSSSGGS 38


>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 478 IGVPRTFPRKVPPDAPCSGALSAAGVVVTRSVSRYTCQRPSAR 350
           +GVP   P   PP AP + + +  GV V R   +  C R S R
Sbjct: 262 LGVPMMMP---PPSAPAAFSGNNYGVEVCRDYLKNMCNRESCR 301


>12_02_0912 -
           24238659-24238897,24239353-24239462,24239548-24239741,
           24239839-24239907,24240096-24240282,24240683-24240969,
           24241593-24241880
          Length = 457

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +2

Query: 566 SMSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAQDQLGARVGYIRTGSQQ 721
           SM+ +HF ++++ + AA  +P+ AH      +    D+ G + G++ +  ++
Sbjct: 357 SMTDEHFGISVVEYMAAGAIPI-AHKSAGPMMDIVLDEDGQQTGFLASEKEE 407


>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
          Length = 427

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 433 PCSGALSAAGVVVTRSVSRYTCQRPSARSFRFLPFLSRHVR 311
           PC G  +A  VV  R+ + Y C    AR        SRH R
Sbjct: 66  PCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHER 106


>03_02_0371 + 7858170-7859624
          Length = 484

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 653 PAFLGEQKQEGKMPQKRE*GRHGN 582
           P F G+QKQ G    K   GR GN
Sbjct: 456 PGFAGKQKQHGSSNSKSSRGRSGN 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,422,010
Number of Sequences: 37544
Number of extensions: 415181
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)