Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0222.Seq
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0116 - 884400-884783,887864-888031,888285-888479,888668-88...    29   3.4  
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    29   4.4  
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478...    28   7.8  

>12_01_0116 -
           884400-884783,887864-888031,888285-888479,888668-888793,
           888900-889082,889633-889755
          Length = 392

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 33  INQKNFRHVTDEYNKQNAKKQ---STGSQSDREAANFPNQTR 149
           +++    H +DEY KQ   ++   STG+Q  R   +F N +R
Sbjct: 74  LDEDGTAHKSDEYTKQKTPRKFDSSTGAQESRSRWSFENHSR 115


>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 105 SQSDREAANFPNQTRNKILAALFAAIAMTGYAVANGMFQELKDFEHSRDYMKC 263
           ++ D +A +        ++AA  AA+A  GY+      +++K  E+ R Y KC
Sbjct: 494 AEGDAKADSSSGAAAVAVVAAAAAAVAEDGYSWRKYGQKQVKHSEYPRSYYKC 546


>01_06_0634 +
           30746767-30747012,30747083-30747118,30747554-30747850,
           30748482-30748544,30748643-30748696,30748837-30748854,
           30749554-30749625,30749731-30749787,30750160-30750236,
           30751013-30751094,30751585-30751701,30752083-30752210,
           30753074-30753143,30753725-30753765,30753963-30753990,
           30754151-30754210
          Length = 481

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 9   NLARFVARINQKNFRHVTDEYNKQNAKKQSTGSQSD 116
           NL  F +  N K   +VTD+ N+QN KK+   S  D
Sbjct: 185 NLKGFDSIENCKRDGNVTDQLNEQNLKKEVVHSMED 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,906,189
Number of Sequences: 37544
Number of extensions: 337429
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)