Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0221.Seq
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 277 NLIGLGSIFLMTLLAFPQPPII 212
           +L G GSI+ MT++AF +  +I
Sbjct: 133 SLFGCGSIWTMTMIAFDRYNVI 154


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 277 NLIGLGSIFLMTLLAFPQPPII 212
           +L G GSI+ MT++AF +  +I
Sbjct: 99  SLFGCGSIWTMTMIAFDRYNVI 120


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 277 NLIGLGSIFLMTLLAFPQPPII 212
           +L G GSI+ MT++AF +  +I
Sbjct: 9   SLFGCGSIWTMTMIAFDRYNVI 30


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 367  LASSGDNAAIPTNPKTTIFPSVK 299
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,164
Number of Sequences: 438
Number of extensions: 5729
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)