Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0219.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   1.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    28   1.3  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    27   4.1  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    26   5.4  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.2  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   9.5  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 44  VLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 208
           V+  +AG+  +   S+   N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 125 YNSILTGDYD-SAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNT-RSTATSCGSATDSTL 298
           Y+S     Y   AV  +     Q     + NV+ + +   SR++ RSTA S   +T  + 
Sbjct: 164 YSSPYNNGYPIGAVNPTSAIPAQPPAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSR 223

Query: 299 SESTSPIT 322
           S S +P+T
Sbjct: 224 SSSANPVT 231



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 68   TEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 208
            TEM + ++   NKEL E +    +  D ++AV  S     +   S++
Sbjct: 1158 TEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNESVL 1204


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 251 TRSTATSCGSATDSTLS 301
           TRST TSC + T+ST++
Sbjct: 49  TRSTRTSCSTTTESTIA 65


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 271 ACSSTPGVPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFF 104
           A SST G+    +  +        ++  +    AL  S +++TGE+  +Q L E F
Sbjct: 242 AFSSTAGMKATESINIYTLPFCSDSIPRLQTLPALNSSKIIITGEEEKLQRLEEAF 297


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +2

Query: 56  SAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 235
           S+  T  S+ + SSS+        +S +T    S+   S+   +      I +     + 
Sbjct: 144 SSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVS 203

Query: 236 DKSRNTRST-ATSCGSATDSTLSESTS 313
             S +T S  +TS  SA+ S    S+S
Sbjct: 204 ASSNSTISGFSTSTTSASSSAAGNSSS 230


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 56  SAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 235
           S+ +T +S+G  SSS       + +SIL+    S    SL   +    S   +   +   
Sbjct: 554 SSSITTISSGISSSSIPSTFSSV-SSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPS 612

Query: 236 DKSRNTRSTATSCGSATDST--LSESTSPITLDSS 334
             S +  S++T   S T ST  L  S+S I   SS
Sbjct: 613 SISSSISSSSTILSSPTPSTSSLMISSSSIISGSS 647


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 59  AGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLE 178
           A + + S    +  + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +2

Query: 95  SSNKELEEKLYNSILTGDYDSAVRQSLEYEN---QGKGSIIQNVVNNLIIDKSR 247
           SSN +LE++LY+ +   D+ + ++Q L+ E    + +    + +  N+ I+ SR
Sbjct: 89  SSNMQLEQQLYSDL---DHINVLQQELKVETARLENEQKSYEEMKQNMAINNSR 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,960
Number of Sequences: 5004
Number of extensions: 53673
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)