Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0219.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468...    29   5.7  
01_01_0942 + 7428384-7429536,7429623-7430335                           29   5.7  
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223     28   7.5  
09_02_0437 - 9399982-9401253                                           28   9.9  
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    28   9.9  
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859...    28   9.9  
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    28   9.9  

>01_06_1783 +
           39845998-39846174,39846260-39846534,39846758-39846891,
           39846992-39847116,39847312-39847494,39847610-39847644,
           39847756-39847912,39847936-39848049,39848143-39848235,
           39848316-39848455,39848606-39848676,39848759-39848839,
           39851475-39851954,39852110-39852387,39853346-39854143
          Length = 1046

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -2

Query: 250 VPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAH 89
           +P L N  VV  ++   AL  V+V+    +S     G+D +VQ   +F V  AH
Sbjct: 322 LPVLGNVTVVTLVILPLALIFVVVWAVHQNSPFAWVGQDLMVQCNDDFLVMFAH 375


>01_01_0942 + 7428384-7429536,7429623-7430335
          Length = 621

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 486 GEQQSVLQIHNTKYNQYLKLSSTTDCNTSRPCYIRHQHRRHHQGA 620
           G + S + +HN  + + L +    D + S P ++RH  RR  Q A
Sbjct: 252 GGELSDVPVHNQLHRRLLTIDDDDDDDGSFPRWVRHNDRRLLQAA 296


>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
          Length = 219

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -2

Query: 175 QALTDSAVVVTGEDAVVQFLLEFFVRTAHASRGHFSDAGADGEHARREHH 26
           Q  T +  +     A  Q  LE F+  A A  G     GADG    R HH
Sbjct: 64  QGATGNGFLRPAGAAAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHH 113


>09_02_0437 - 9399982-9401253
          Length = 423

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 202 GALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAHASRG 77
           G +  VL+ +A    AVV  GED V ++ +E  VR + A+RG
Sbjct: 300 GGILTVLIKRARRP-AVVAGGEDDVEEWAVEKSVRLSEATRG 340


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 155 SAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTRSTATSCGSATDST 295
           SA R+++E +NQ     +   +++  +D+  +T   A  CG  T +T
Sbjct: 471 SAAREAVEQDNQEWHVQVFRSIDSRAVDRFPDTAGEAARCGLVTGAT 517


>02_05_0267 -
           27284781-27284957,27285082-27285126,27285858-27285923,
           27286043-27286114,27286225-27286350,27286563-27287217,
           27287313-27287521
          Length = 449

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 528 NQYLKLSSTTDCNTSRPCYIRHQHRRHHQ 614
           N  L++   T  +++  CY  H H  HHQ
Sbjct: 148 NTVLQVQDMTMMSSTPACYGEHHHHHHHQ 176


>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 376 LALKLGPTLDPANERLAYGDGKEKNS 453
           +AL  GP L P N   A+G G E  S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGS 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,929
Number of Sequences: 37544
Number of extensions: 379003
Number of successful extensions: 1197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)