Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0219.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   3.3  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     29   3.3  
SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/111 (21%), Positives = 49/111 (44%)
 Frame = +2

Query: 2   ATVIMKFLVVFASCVLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEY 181
           A  I   + V  +  +AVS+  +  S+ S +SSN        ++  +    S+   S   
Sbjct: 27  AVAIAIAVAVAVAVAIAVSSSSSRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSS 86

Query: 182 ENQGKGSIIQNVVNNLIIDKSRNTRSTATSCGSATDSTLSESTSPITLDSS 334
            +    S   +  ++     S ++ S+++S  S++ S+ S S+S  +  SS
Sbjct: 87  SSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 137


>SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 568 VLQSVVELSFKYWLYLVLWI*STLCCSP 485
           +L  V    F+ WL L+LW+ S + CSP
Sbjct: 140 ILARVRRFRFRKWLPLLLWLISLIICSP 167


>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 376 LALKLGPTLDPANERLAYGD 435
           +++KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 101 NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTRSTATSCGS 280
           + E  E+    I   DY++   + ++ E  G  S+ ++  N      +R T +T T C S
Sbjct: 171 SSEKSERYIEKIRKADYENLPDEDVQ-ECAGLDSV-RDSTNTKCFSATRATVATNTKCYS 228

Query: 281 ATDSTLSEST 310
           AT +T++ +T
Sbjct: 229 ATRATMATNT 238


>SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 441 GKEQRPHQLEVH---YLVGEQQSVLQIHNTKYNQYLKLSSTTDCNTSRPC 581
           G+ QR  + EV    Y  GEQQSV       YN   K  S TD N   PC
Sbjct: 35  GELQRQKEFEVAMFMYRTGEQQSV-------YNNARKKESRTDANRPSPC 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,471,428
Number of Sequences: 59808
Number of extensions: 445563
Number of successful extensions: 1426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)