Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0219.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-5|AAQ23124.1|  368|Caenorhabditis elegans Prion-like-(q/n...    33   0.24 
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   5.1  
U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical p...    28   6.7  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    28   6.7  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U55364-5|AAQ23124.1|  368|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform b protein.
          Length = 368

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +2

Query: 14  MKFLVVFASCVLAVSA-GVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEY-EN 187
           M+FL + + CVLAV+A   +  S       ++  +   Y S      + A  Q ++Y +N
Sbjct: 1   MQFLTILSVCVLAVAAQQQSAYSTNQQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 60

Query: 188 QGKGSIIQNVVNNLIIDKSRNTRSTATSCGSATDS 292
           Q  GS  Q   N +   ++ N  ST ++  +  +S
Sbjct: 61  QQYGSTAQYNQNQMQNQQNSNQYSTTSNMNNQQNS 95


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 251 TRSTATSCGSATDSTLSESTSPITLDSS 334
           T ST  S  ++TDST +EST+  T +S+
Sbjct: 215 TESTTESTSTSTDSTTTESTTESTTEST 242


>U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical
          protein M03F4.7b protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 97 TAHASRGHFSDAGADGEHARREHHEKFHYH 8
          TA AS  H SD   DGEH + + H+K + H
Sbjct: 13 TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
          protein M03F4.7a protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 97 TAHASRGHFSDAGADGEHARREHHEKFHYH 8
          TA AS  H SD   DGEH + + H+K + H
Sbjct: 13 TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
          protein protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 97 TAHASRGHFSDAGADGEHARREHHEKFHYH 8
          TA AS  H SD   DGEH + + H+K + H
Sbjct: 13 TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -2

Query: 94  AHASRGHF---SDAGADGEHARREHHEKFHY-HS 5
           A  S G+F   S+ G  G H   EHH K H+ HS
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHS 58


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -2

Query: 94  AHASRGHF---SDAGADGEHARREHHEKFHY-HS 5
           A  S G+F   S+ G  G H   EHH K H+ HS
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,914
Number of Sequences: 27780
Number of extensions: 319451
Number of successful extensions: 1268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)