Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0218.Seq
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    27   3.3  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.4  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   5.8  

>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 607 DTTRGAVGSFQPTKYGKNXRSLVLSIXXN 693
           D+T  +VGSF   ++GKN    V+S   N
Sbjct: 146 DSTDESVGSFMRRRFGKNVTDRVMSAMIN 174


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 605 PTPPGEQLVPSSPRSTEKTNV 667
           PTPP +  +PS PRST   N+
Sbjct: 31  PTPPHDDGLPSIPRSTALPNL 51


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 540 KTKFDD*LQHSRTVLYSGTNNGRHHQGSSWFL---PAHEVRKKXTFLG 674
           K +F + L+H    + S  N G++  GS +F+   PA  +  K T  G
Sbjct: 347 KDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFG 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,647
Number of Sequences: 5004
Number of extensions: 48164
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)