Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0218.Seq
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     30   2.7  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   8.3  
SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019)             28   8.3  
SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4)               28   8.3  
SB_3941| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +1

Query: 421  LHTAMVRKRTXXSSVGSSLPCGXTTEC--TSNPQH*VQPST*KLSSTTDCN---TQEPCY 585
            L++ + +  T  ++VG + P    +    TSNP   +   T +   TT+ +   T+ P  
Sbjct: 817  LNSLVPQLGTTIATVGLTTPAAKPSSVKPTSNPATVLSDGTTENPETTEASKTTTEAPAT 876

Query: 586  IRAPTTADTTRGA 624
              A TTA TTRG+
Sbjct: 877  TTATTTATTTRGS 889


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 201  HHRXCSXQPDH*QESEHHEYCYKLWVGNGQHI-VRKYFPYNFRLIMAGNFVKLIYRNY 371
            HH      P H +   HH + Y+L   +  H  V ++ P+++R++    F   + R++
Sbjct: 999  HHHHYHYHPFHYRLLRHHSFHYRLLRHHPFHYRVLRHHPFHYRVLRHHPFYYRVLRHH 1056


>SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019)
          Length = 233

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 492 NRVYFKSTTLSTTQYLKTKFDD*LQHSRTVLYSGTNN 602
           N+ Y    T    QY++T  DD   +   +++SGTN+
Sbjct: 40  NKQYVAGGTKELLQYIQTMDDDRNDYEHIIVHSGTND 76


>SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4)
          Length = 187

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 492 NRVYFKSTTLSTTQYLKTKFDD*LQHSRTVLYSGTNN 602
           N+ Y    T    QY++T  DD   +   +++SGTN+
Sbjct: 40  NKQYVAGGTKELLQYIQTMDDDRNDYEHIIVHSGTND 76


>SB_3941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 492 NRVYFKSTTLSTTQYLKTKFDD*LQHSRTVLYSGTNN 602
           N+ Y    T    QY++T  DD   +   +++SGTN+
Sbjct: 359 NKQYVAGGTKELLQYIQTMDDDRNDYEHIIVHSGTND 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,489
Number of Sequences: 59808
Number of extensions: 397675
Number of successful extensions: 907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)