Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0218.Seq
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine re...    29   3.1  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    28   9.6  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    28   9.6  

>AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine
           receptor, class x protein110 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 631 NQLLPWWCRPLLVPEYNTVLECCSQSSNLVFKYW--VVLSVVDL-KYTLLFXH 482
           N+ L  WC P+  P Y+T +   + + + +F  W   ++ + D+ ++   F H
Sbjct: 109 NRFLVVWCSPVNTPRYSTRITVAAMAISWLFTVWFSTLIGMPDICRFPFSFDH 161


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 553 SNLVFKYWVVLSVVDLKYTLLFXHKVMNFQLMXPLFFSLPSP 428
           +N +  +  V+SVV L + L F  KV  F  M  +  + PSP
Sbjct: 245 NNKMIAFGTVISVVVLHFLLAFTFKVYFFDSMHIVVVASPSP 286


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 553 SNLVFKYWVVLSVVDLKYTLLFXHKVMNFQLMXPLFFSLPSP 428
           +N +  +  V+SVV L + L F  KV  F  M  +  + PSP
Sbjct: 235 NNKMIAFGTVISVVVLHFLLAFTFKVYFFDSMHIVVVASPSP 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,600
Number of Sequences: 27780
Number of extensions: 295301
Number of successful extensions: 976
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)