Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0218.Seq
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to...    30   2.2  
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    29   3.9  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    29   3.9  

>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to
           gi: 3172025; identical to cDNA putative aldehyde oxidase
           (AO3) mRNA, partial cds GI:2792303
          Length = 1321

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 613 WCRPLLVPEYNTVLECCSQSSNLV 542
           WC P  V E +++LE C  +SN V
Sbjct: 222 WCSPASVEELSSLLEACKANSNTV 245


>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = +2

Query: 515 NTKYNPVLEN*VRRLTATL------KNRVIFGHQQRPTPPGEQLVPSSPRSTEKTNVPWF 676
           NT  +PV E  +R L ++L       N++  GH+QRP  PG +  P  P + ++  +P  
Sbjct: 38  NTAESPVSEY-MRYLQSSLGDSGPNANQMQPGHEQRPYIPGHEQRPYVPGNEQQPYMPGN 96

Query: 677 FQSXXIAGXQXXAF 718
            Q   I G +  ++
Sbjct: 97  EQRPYIPGHEQRSY 110


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = +2

Query: 515 NTKYNPVLEN*VRRLTATL------KNRVIFGHQQRPTPPGEQLVPSSPRSTEKTNVPWF 676
           NT  +PV E  +R L ++L       N++  GH+QRP  PG +  P  P + ++  +P  
Sbjct: 145 NTAESPVSEY-MRYLQSSLGDSGPNANQMQPGHEQRPYIPGHEQRPYVPGNEQQPYMPGN 203

Query: 677 FQSXXIAGXQXXAF 718
            Q   I G +  ++
Sbjct: 204 EQRPYIPGHEQRSY 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,240
Number of Sequences: 28952
Number of extensions: 268479
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)