Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0217.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    39   7e-04
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.4  
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    27   4.1  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   4.1  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   5.4  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   7.2  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 596 RITRINDKYEVCDSYPSIWAVPSAADDDLLRSVATFRSR 712
           RIT+IN+ Y  C SYP   AVP++  D ++     +RS+
Sbjct: 149 RITKINENYSECHSYPQALAVPASISDSVIYYGCKYRSK 187


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 236 SDKLSTYFRPTDPSATLGTLSVPLGVVSRIEKVGGASSKGEN 361
           + K S   +PT+ SA L T++   G+ SRI  + G+S K  N
Sbjct: 326 AQKSSKRIKPTEGSANLNTVTELTGIGSRI-AMNGSSVKASN 366


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 215 STVWAQISYITSYTCNLFTI 156
           ST W  +SY+ ++TC + TI
Sbjct: 485 STYWVTLSYLCTFTCCIMTI 504



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 428 HSRRGIFEKLQQLAFPLSHRLPMFAFSILKV 520
           +SRR IFE++   AF  S    +F F++L +
Sbjct: 3   NSRRHIFERICAKAFQSSLTCSIFGFTVLLI 33


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 569 RLSSAMGSYTCQPSSGKLSEY*MQTSEVGVTEEKLAAAVFQIYHDVNDS 423
           R+   + +   QP+    S   M T E+ + EE++A    Q++H VN++
Sbjct: 60  RVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNN 108


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 635 YHTLHTYRLFVLCAHMSLLTPIRLSSAMGSYTCQPSSGKLSEY 507
           +H+ H +  F+LC  + L    + SSAM S+ C   S  LS+Y
Sbjct: 21  FHSFHCF--FLLCFTVMLCVVQQCSSAMTSFRCPTFS--LSKY 59


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 371 FHMSFHLWKKHHQLFQFEKQPPVAHSMYL 285
           F  + HLW++H+ +  F   P  A  + L
Sbjct: 282 FWTASHLWRRHYDILPFNVSPTTASPIEL 310


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 167 GYKCSS*CNLFVPIQWTNEGSPE---SDKLSTYFRPTD 271
           G+KC + C L VP    N G PE    D + T    TD
Sbjct: 432 GFKCHARCELLVPANCKN-GEPEVADDDAVDTSVTATD 468


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 344  SSKGENSYGIEIFCKDMRNLRFAHRQENHSRRGIFEKLQQLAF 472
            SS  E + G     K + +L F H     S++GI+E  QQL F
Sbjct: 1083 SSYIEETIGYSFKNKKLLHLAFIH-PSMMSQQGIYENYQQLEF 1124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,241
Number of Sequences: 5004
Number of extensions: 70765
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)