Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0217.Seq
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0185 + 13908914-13909576,13911739-13912668 32 0.46
03_05_1048 - 29950860-29951396,29951810-29952676 32 0.61
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 30 1.9
10_06_0050 - 10072226-10072606 29 4.3
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 29 5.7
07_03_1299 + 25598869-25600006,25600718-25600773 28 9.9
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 9.9
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601... 28 9.9
>10_07_0185 + 13908914-13909576,13911739-13912668
Length = 530
Score = 32.3 bits (70), Expect = 0.46
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -1
Query: 599 CAHMSLLTPIRLSSAMGSYTCQP--SSGKLSEY*MQTSEVGVTEEKLA-AAVFQIYHDVN 429
C+H +LL PI LS+A+G S +LSE+ V +T ++ A AA+ D
Sbjct: 323 CSHRTLLDPIFLSAALGRPVAAVTYSLSRLSEFLSPIRTVRLTRDRAADAAMIGELLDEG 382
Query: 428 DSLVCVQILSSSYPY 384
D +C + + P+
Sbjct: 383 DLAICPEGTTCREPF 397
>03_05_1048 - 29950860-29951396,29951810-29952676
Length = 467
Score = 31.9 bits (69), Expect = 0.61
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -1
Query: 662 KGLPI*TDSYHTLHTYRLFVLCAHMSLLTPIRLSSAMGS--YTCQPSSGKLSEY*MQTSE 489
KG P S T + LF+ C+H +LL PI LS+A+G S +LSE
Sbjct: 244 KGTPPPPASRETGQSGVLFI-CSHRTLLDPIFLSTALGRPITAVTYSVSRLSEILSPIRT 302
Query: 488 VGVTEEKLA-AAVFQIYHDVNDSLVCVQILSSSYPY 384
V +T ++ A AA+ + D ++C + + P+
Sbjct: 303 VRLTRDRAADAAMIRRLLAEGDLVICPEGTTCREPF 338
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = -1
Query: 761 GLGSLG*IQDSYRNAAHVI*MLPLIVVNHHQ--LQKGLPI*TDSYHTLHTYRLFVLCAHM 588
G S G SYR + HV+ +PL V+ H + LP+ Y + ++L L +
Sbjct: 242 GRPSYGVALPSYRQSLHVLGSMPLCVLVPHLSCFSQELPMVVTKYQAISGHKLLSLGDLL 301
Query: 587 SLLTPIRLSSAMGSYTCQPSSGKLSE 510
+ +R S T G +SE
Sbjct: 302 RFMLELRARLPATSVTAMDYRGIMSE 327
>10_06_0050 - 10072226-10072606
Length = 126
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 510 ILNANIGSRCDRGKASCCS-FSNIPRRE*FSCLCANLKF-LISLQKISIPYEFS 355
+LN IG + RG CC + I + CLC LK ++ L +++P + S
Sbjct: 57 LLNGLIGVKIGRGPDDCCPLLAGIADLDAAVCLCTALKANVLGLINLNLPVDLS 110
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +2
Query: 611 NDKYEVCDSYPSIWAVPSAADD-----DLLRSVATFRSRGPH 721
ND E+C Y SI+ +PS +D +LR + + PH
Sbjct: 229 NDYLEICRCYKSIYEIPSIKEDPSKWIPVLRKICWYLVLAPH 270
>07_03_1299 + 25598869-25600006,25600718-25600773
Length = 397
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 296 SVPLGVVSRIEKVGGASSKGENSYGIEIFCKDMRNLRFAHRQE 424
+V LG V+R+ K+GG ++ S + D FAHR E
Sbjct: 120 AVQLGAVNRVLKLGGVAAGFATSGSSTLQLPDNYKAVFAHRSE 162
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 324 IRETTPSGTLNVPRV-ALGSVGLK*VDSLSLSGLPSLVHCMGT 199
+ E + G LN+ R+ +L V + +D L L LP+L C+GT
Sbjct: 879 LEEISSLGKLNLIRMWSLVDVSIPSLDELVLIDLPNLEKCIGT 921
>01_05_0013 -
17156017-17157647,17157977-17158144,17160064-17160113,
17160796-17160833,17161102-17161212
Length = 665
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -1
Query: 446 IYHDVNDSLVCVQILSSSYPYKKFLFHMSFHLW---KKHHQLFQFEKQPPV 303
+YH+ ND ++ + I + Y K + +H W K H + Q P+
Sbjct: 343 VYHEFNDGIIPLYITARQYNKKVVFVMLEYHDWWMTKYGHIVEQLSDYAPI 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,449,446
Number of Sequences: 37544
Number of extensions: 454320
Number of successful extensions: 1081
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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