Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0217.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 368 GIEIFCKDMRNLRFAHRQENHSRRGIFEKLQQL 466
           G+    +D+R +  A+       +GIF +L+QL
Sbjct: 279 GLFASTRDLREIHLAYNGLRDLPKGIFTRLEQL 311


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 451 KTAAASFSSVTPTSDVCIQYSESFPEDGWHVYEPIAELRRMGV 579
           K+  A+   + PT  +C++  + FP  G      + +   +GV
Sbjct: 395 KSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGV 437


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 343 STTNFFNSRNNPQWHTQCT 287
           S+T     +  PQWHT+ T
Sbjct: 603 SSTKGITIQEPPQWHTRST 621


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,870
Number of Sequences: 438
Number of extensions: 4889
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)