Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0217.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04540.1 68418.m00454 expressed protein                             42   5e-04
At3g10550.1 68416.m01266 expressed protein                             35   0.072
At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1...    32   0.38 
At1g64300.1 68414.m07287 protein kinase family protein contains ...    29   2.7  
At3g11760.1 68416.m01443 expressed protein                             29   3.6  
At1g15810.1 68414.m01897 ribosomal protein S15 family protein co...    29   3.6  
At5g64760.1 68418.m08143 26S proteasome regulatory subunit, puta...    28   6.2  
At5g41730.1 68418.m05074 protein kinase family protein contains ...    28   8.3  
At1g64850.1 68414.m07352 calcium-binding EF hand family protein ...    28   8.3  

>At5g04540.1 68418.m00454 expressed protein
          Length = 833

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 596 RITRINDKYEVCDSYPSIWAVPSAADDDLLRSVATFRSR 712
           RIT +N  Y++C SYP    VP +  D+ L   +TFR+R
Sbjct: 220 RITNLNSNYDLCQSYPFALMVPKSISDEELLQTSTFRAR 258


>At3g10550.1 68416.m01266 expressed protein
          Length = 634

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 596 RITRINDKYEVCDSYPSIWAVPSAADDDLLRSVATFRSR 712
           RI+ +N  Y +C +YP  + +P +  D  L    +FR+R
Sbjct: 17  RISDLNSNYNLCQTYPFAFMIPKSISDAELLQACSFRAR 55


>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
           identical to male sterility 1 protein [Arabidopsis
           thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
           contains Pfam profile PF00628: PHD-finger; identical to
           cDNA male sterility 1 protein (ms1 gene) GI:15554514
          Length = 672

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 761 GLGSLG*IQDSYRNAAHVI*MLPLIVVNHH--QLQKGLPI*TDSYHTLHTYRLFVL 600
           G G+ G  Q  Y  A   +  +PL ++NHH   L +  PI    Y +L T  L  L
Sbjct: 235 GSGTYGVTQKIYEKALESVRNIPLCLLNHHLTSLNRETPILLSKYQSLSTEPLITL 290


>At1g64300.1 68414.m07287 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 717

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 493 DVCIQYSESFPEDGWHVYEPIAELRR 570
           D+C+++  S+ ED W++ E + E R+
Sbjct: 172 DICLRFEHSWREDRWNLVEALQEKRK 197


>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 221 EGSPESDKLSTYFRPTDPSATLGTL 295
           EG PE D+L+   R   P ATLG+L
Sbjct: 36  EGVPEKDRLTVEIRWKGPKATLGSL 60


>At1g15810.1 68414.m01897 ribosomal protein S15 family protein
           contains similarity to ribosomal protein S15
          Length = 419

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/78 (21%), Positives = 34/78 (43%)
 Frame = +2

Query: 230 PESDKLSTYFRPTDPSATLGTLSVPLGVVSRIEKVGGASSKGENSYGIEIFCKDMRNLRF 409
           P+ D + TYF P D  ++   + + L  V    K+  +          ++  K       
Sbjct: 310 PKEDLVDTYFHP-DNMSSAEKMKIELSKVREEFKMSESDCGSARVQVAQLTTKIKHLSSS 368

Query: 410 AHRQENHSRRGIFEKLQQ 463
            H+++ HSR+G+   +Q+
Sbjct: 369 LHKKDKHSRKGLLGMVQK 386


>At5g64760.1 68418.m08143 26S proteasome regulatory subunit,
           putative (RPN5)
          Length = 442

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 611 NDKYEVCDSYPSIWAVPSAADD-----DLLRSVATFRSRGPH 721
           N+  E+C SY +I+ +PS  ++      +LR +  F +  PH
Sbjct: 228 NEYIEICRSYKAIYDIPSVKENPEQWIPVLRKICWFLALAPH 269


>At5g41730.1 68418.m05074 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 711

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 493 DVCIQYSESFPEDGWHVYEPIAELRR 570
           D+C ++  S+ ED W++ E + E R+
Sbjct: 172 DICSRFEHSWREDRWNLVEALQEKRK 197


>At1g64850.1 68414.m07352 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 162

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 503 MQTSEVGVTEEKLAAAVFQIYHDVNDSL 420
           MQT    +T E+L  AV  +Y+D+N  L
Sbjct: 31  MQTGRANLTFEELYIAVLLVYNDINKRL 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,265,309
Number of Sequences: 28952
Number of extensions: 369061
Number of successful extensions: 946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)