Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0214.Seq
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   1.6  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    26   3.7  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   8.5  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 223 CQLCIKKCS*QSTQHVDLLVALISPLMERYAAKS 122
           C +C+KKC   +   ++L   L S +  RY+A S
Sbjct: 58  CGICVKKCPFGAINIINLPTNLESEVTHRYSANS 91


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 562 FLFVMTKLTKFRTAPSFVTL*LNNFYELAVHRPYLGIP 449
           F F++  + + RT     T+   NFY L    PY   P
Sbjct: 49  FFFIIGIINRRRTKKGQATIPFTNFYPLTAPPPYTAEP 86


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -2

Query: 253 HYHNLNGAALCQLCIKKCS*QSTQHVDLLVALISPLMERYAAKSISKKN 107
           H+  + G+ +C++  KKC  +S  H+  +    +P +       + K N
Sbjct: 99  HWTRIQGSEMCKILDKKCP-ESAPHLPFVAFRYAPPLTEDMLDELKKAN 146


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 391 DVELNERRPPNSLFSSSNL 447
           D+EL +R PP+S  +SS++
Sbjct: 152 DIELTQRTPPSSSHTSSSI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,672
Number of Sequences: 5004
Number of extensions: 39264
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)