Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0210.Seq
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 31 1.1
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 30 1.9
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 30 2.5
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 29 4.3
11_06_0306 + 22223514-22224095,22225426-22225638,22226310-222265... 29 5.7
02_04_0243 + 21244743-21245837,21245921-21246148,21246240-212464... 28 7.5
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 28 9.9
06_01_0488 + 3467962-3468018,3468366-3468788 28 9.9
05_06_0158 - 26054487-26054672,26054770-26055018,26056003-260566... 28 9.9
03_06_0745 + 35937173-35938256,35938994-35939721 28 9.9
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/58 (41%), Positives = 27/58 (46%)
Frame = +1
Query: 310 SRREVGAVCRRQRLLLVIQRPLCGHSEDAEAFGLTAPVAGPMEGRGQRGEDCGYPLRS 483
SR AV R LL P G + A A AP AGP+ G G R E CG+P S
Sbjct: 19 SRAGAAAVARSACFLL----PRAGAT--AAALPGCAPCAGPVLGDGHRVEFCGWPCSS 70
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +1
Query: 379 GHSEDAEAFGLTAPVAGPMEGRGQRGEDCGYPLRSGPHNSRPGKLSLRG 525
GH DA F A V+ P GRG+RG G P R ++P RG
Sbjct: 93 GH-RDATVFQAVADVSPPGRGRGRRGGHGGGPGRGKRSATQPSARGGRG 140
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 226 GTPAVTGRTDDXAPXTASKKDLPSRYDPSSSHVG 125
G P+ GR+DD + KK +PSRY S G
Sbjct: 185 GGPSPAGRSDDIDDWSRDKKPMPSRYPSLGSGGG 218
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 344 SAYFSSSNVPSAAILR--MQRLLDLLPQWLDRWRVAVNVG 457
+A+F+ SN P A L MQ +PQWL+R+ + G
Sbjct: 692 TAFFNESNTPLARPLSELMQEANQEVPQWLERYAARSSFG 731
>11_06_0306 +
22223514-22224095,22225426-22225638,22226310-22226576,
22227002-22227322
Length = 460
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = -3
Query: 543 LNSTLAPTETELPGTTVVRTGPKRIAAVFPTLT-ATLHRSSHWGSKSKSLCILRMAAEGT 367
L L PT+ TT A P L A + WG + S + R+A EG
Sbjct: 20 LGGLLIPTDAAATTTTTAEGNDLHADASHPVLRLAGAVQHYEWGGRRGSSLVARLAGEGD 79
Query: 366 LDDEK 352
DE+
Sbjct: 80 DGDER 84
>02_04_0243 +
21244743-21245837,21245921-21246148,21246240-21246458,
21246557-21247000,21247440-21247547,21247790-21247909
Length = 737
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 25 VHGRSLSRYRESLRTCLACGTDPQAGAEHGPPARLRANCWGRTW-REDPSLT 177
V+ RS S + SL + G + A GPPA +++ +G TW R+D + T
Sbjct: 525 VNPRSASHHYSSLEDSVP-GFRMEPPAAAGPPAAMQSGGFGSTWYRKDHAAT 575
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 37 SLSRYRESLRTCLACGTDPQAGAEHGPPARLRANCWGRTWREDPSLTRXXAXSRRCAQSR 216
SLSR + A +PQA A PPAR A+ T R A + A +R
Sbjct: 11 SLSRLAGEVDDAAADEAEPQASAASSPPARGAADRSHTTPPSSGRRRRYSASASSAAAAR 70
Query: 217 PE 222
P+
Sbjct: 71 PD 72
>06_01_0488 + 3467962-3468018,3468366-3468788
Length = 159
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -3
Query: 165 IFPPGTTPAVRT*A----CWRSVFCTSLWISPAC 76
+F P +PA A CWRS CT + S AC
Sbjct: 28 VFKPDQSPAAMQKAIDYACWRSADCTQIMQSGAC 61
>05_06_0158 -
26054487-26054672,26054770-26055018,26056003-26056611,
26056970-26056972
Length = 348
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 346 RLLLVIQRPLCGHSEDAEAFGLTAPVAGPMEGRGQRGE 459
R+LL++ R + G D FGL P GP+E + G+
Sbjct: 235 RILLLVARAILG---DTSQFGLKRPSLGPLELKSLSGK 269
>03_06_0745 + 35937173-35938256,35938994-35939721
Length = 603
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +1
Query: 316 REVGAVCRRQRLLLVIQRPL-CGHSEDA----EAFGLTAPVAGPMEGRGQRGEDCGY 471
R+VG C R LV+ + E+A +AF T P+ + + GE CGY
Sbjct: 60 RQVGEACERHGFFLVVNHGIEAALLEEAHRCMDAF-FTLPLGEKQRAQRRAGESCGY 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,153,180
Number of Sequences: 37544
Number of extensions: 497827
Number of successful extensions: 1465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -